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. 2011 Oct 12;6(10):e25716. doi: 10.1371/journal.pone.0025716

Table 1. Primers used for PCR detection of genes encoding virulence factors.

Oligonucleotides sequences size pb/PCR set accession n°
edinA 1: 5′-TCATAGAAGTATCTAATACTTCTTTAGCA-3′ 604/2 M63917
edinA 2 : 5′-TCCAACACGGTATTCTGTGCCTCTAGGTA-3′
edinb 1: 5′-ACAGACTTAGTTGAAGCTACTAAATG-3′ 522/5 AB057421
edinb 2: 5′-TGTCCCTGTAGGCAAAAGAACTTCTTG-3′
edinC 1: 5′-AGGTCTTCCAGCTAATGCAGCTCCTT-3′ 543/6 NC 003265
edinC 2: 5′-ACAGTTCAAAAGACAAAGAAGCTATT-3′
etd 1: 5′-AATACATATGAAGAATCTGAAATTTTA3′ 800/4 AB057421
etd 2: 5′-AAGTTATTCCATAATGATTAGAATGA-3′
lukE-lukD 1: 5′-AATACTAATATTGAAAATATTGGTGATGG-3′ 1882/8 Y13225
lukE-lukD 2: 5′-CTTAAATTTCGGGTTTAACTCCTCTATTTC-3′
see 1: 5′-CTTACCGCCAAAGCTGTCG-3′ 159/3 M21319
see 2: 5′-GTCCACTTGTAAATGGTAGCGAGAA-3′
seg 1: 5′-AATTATGTGAATGCTCAACCCGAT-3′ 408/3 AF064773
seg 2: 5′-CTTTAGTGAGCCAGTGTCTTGCTTTG-3′
seh 1: 5′-CATCTACCCAAACATTAGCACC-3′ 222/5 U11702
seh 2: 5-TAGAAATCAAGGTGATAGTGGCAA-3′
sek 1: 5′-TGATACTCCTATAGCTAATCAACTACA-3′ 300/3 U93688
sek 2: 5-ACATCAATCTCTTGAGCGGTAACA-3′
sel 1: 5′-ACCAGAATCACACCGCTTAGAATAC-3′ 422/2 AF217235
sel 2: 5′-TGGAATACTACACTCCCCTTATCAAAAG-3′
set1-1: 5′-GAAGGTCTACAAGGCCAAAATGTCT-3′ 363/6 BX571856
set1-2: 5′-TCAACACATCGCCCATGCGCTCGA-3′
bbp 1: 5′-CGGCTAGTGATAATAAAGAAGTAGTG-3′ 550/1 BA000018
bbp 2: 5′-CTTGTTGGAGCTGTAGCAACTGGTTT-3′
clfB 1: 5′-ATTAGTGCAAACACAAACAGTGCG-3′ 305/4 AJ224764
clfB 2: 5′-AGTTCCTTGCGCATTGGAAATCGT-3′
cna 1: 5′-CGGGAGATATGCTACCAGAAGATA-3′ 278/1 BX571857
cna 2: 5′-ATAGCCTTGTGGAATTGTTACATCA-3′
ebp 1: 5′-AGACCAATCAGAATTAGAACATCA-3′ 378/4 U48826
ebp2: 5′-TCAGAAACTGTTGAATGCTCAGTGT-3′
fib 1: 5′-AGCGGCAATAGGTATTACTACAACT3′ 220/2 X72013
fib 2: 5′-CGAATGTACCATCGTTAAATTCAT-3′
fnbA 1: 5′-TTAACTTGGGATAATGGTTTAGTTT-3′ 273/7 AJ629521
fnbA 2: 5′-GCTGATGAATCCGTTTCTTCTATTG-3′
fnbB 1: 5′-TGGAAGAAACTAAAGCGACAGGTAC-3′ 317/1 AJ629502
fnbB 2: 5′-TTCTTTAAACGTATATCTAACTTTTC-3′
lbp 1: 5′-TGGTGTATATGACTACAGTAAGTT-3′ 410/5 AF065394
lbp 2: 5′-CGTTTGTAGCAACAGCAATATCAGC-3′

Other virulence factors have been detected by multiplex PCR onto purified total DNA (Qiagen). Presence of genes encoding enterotoxins E, G, H, K, L, T, epidermolysin D (Etd), genes encoding Edin A and EDIN B and the genes encoding seven adhsesion factors (Cna, FnbA, FnbB Bbp, Clfb, Fib, Ebp and Lbp) was checked in 8 set in function of base size.