Table 2.
Predicted contributions to the m-value/RT or μ23/RT for exposure of 1,000 Å2 of protein surface
Process |
Surface of native protein‡ |
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Surface type, i |
Globular protein unfolding* |
α-helix melting† |
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∆ASA | Urea§ | GB§ | ∆ASA | Urea§ | GB§ | ASA | Urea§ | GB§ | |
Amide O | 120 | −0.10 | 0.34 | 480 | −0.42 | 1.34 | 100 | −0.09 | 0.28 |
Carboxylate O | 40 | −0.02 | 0.12 | 100 | −0.04 | 0.29 | 160 | −0.06 | 0.46 |
Hydroxyl O | 30 | −0.01 | 0.0 | 0 | 0 | 0 | 20 | −0.01 | 0.0 |
Amide N | 50 | −0.02 | −0.10 | 90 | −0.03 | −0.18 | 40 | −0.01 | −0.08 |
Cationic N | 40 | 0.01 | −0.05 | 0 | 0 | 0 | 130 | 0.02 | −0.16 |
Aliphatic C | 650 | −0.07 | 0.20 | 330 | −0.04 | 0.10 | 530 | −0.06 | 0.16 |
Aromatic C | 70 | −0.06 | −0.16 | 0 | 0 | 0 | 20 | −0.02 | −0.05 |
Predicted m-value/RT or μ23/RT per 1,000 Å2 of surface: | −0.27 | 0.35 | −0.53 | 1.55 | −0.22 | 0.61 | |||
Experimentally derived value: | −0.31 | 0.34 | −1.01 | ND | −0.21 | 1.31 |
*Globular protein m- value/RT are from the average of the Hong et al. protein dataset (13) with the addition of trp cage (30) for urea, and from lacDBD (15) for GB. Both are scaled to 1,000 Å2.
†Average observed α-helix unfolding m-value/RT for urea is calculated by multiplying the average residue urea m-value/RT of (AEAAKA)n peptides [-0.039 M-1; (19)] by 26, the number of residues needed to expose approximately 1,000 Å2 of surface in unfolding this α-helix.
‡Modeled using urea- and GB-BSA interaction data and BSA surface composition from refs. 4 and 18, scaled to 1,000 Å2 of surface.
§Contribution to unfolding m-value/RT or urea-native protein μ23/RT from each surface type (i), calculated from (αi values from Table 1) × ΔASAi.