Table 2.
Similarity searches of pathogen-induced and genotype-specific TDFs
| Expression pattern group | TDF no. | GenBank accession no. | bp | Putative id (blastn nr) | E value |
|---|---|---|---|---|---|
| Subgroup C1 | TDF108 | EX982036 | 352 | Udp-glucosyltransferase Nm_001058184.1 oryza sativa |
1.00E-17 |
| TDF73 | EX982037 | 392 | Ak058841.1 oryza sativa | 3.00E-13 | |
| TDF83 | EX982038 | 385 | Phenylalanine ammonia-lyase L11883.1 Triticum aestivum |
9.00E-166 | |
| TDF146 | EX982039 | 326 | DnaJ-like protein AP008215.1 Oryza sativa |
3.00E-19 | |
| TDF208 | EX982040 | 115 | Pathogenesis-related family protein X16648.1 hordeum Vulgare |
5.00E-29 | |
| Subgroup C2 | TDF214 | EX982041 | Sucrose-phosphatase 1 NM_001061163.1 Oryza sativa |
2.00E-87 | |
| TDF75 | EX982042 | 299 | Unknown protein NM_001056870.1 Oryza sativa |
3.00E-24 | |
| TDF40 | EX982043 | 160 | No significant similarity found | ||
| Subgroup C3 | TDF59 | EX982044 | 164 | Delta-1-pyrroline-5-carboxylate dehydrogenase AY972619.1 Hordeum vulgare |
6.00E-30 |
| TDF140 | EX982045 | 109 | No significant similarity found | ||
| TDF225 | EX982046 | 131 | Delta-1-pyrroline-5-carboxylate dehydrogenase AY972619.1 Hordeum vulgare |
1.00E-17 | |
| TDF100 | EX982047 | 135 | No significant similarity found | ||
| Subgroup C4 | TDF17 | EX982048 | 607 | Phenylalanine ammonia-lyase AK250690.1 Hordeum vulgare |
0.00E + 00 |
| TDF79 | EX982049 | 138 | Cytochrome P450 NM_001058712.1 Oryza sativa |
1.00E-24 |
The identity of the highest scoring BLASTN GenBank non-redundant hit was assumed as the putative gene ID