Table 1.
M. tuberculosis dataset
| strain ID | source | resist. | # of genes | lab. |
|---|---|---|---|---|
| H37Rv | NC_000962 | DS | 3988(26) | S |
| H37Ra | NC_009525 | DS | 4034(22) | C |
| F11 | NC_009565 | DS | 3941(5) | B |
| KZN 4207(T) | PLoS One. [16] | DS | 3902(47) | T |
| KZN 4207(B) | Broad Institute | DS | 3996(4) | B |
| KZN 1435 | Broad Institute | MDR | 4059(10) | B |
| KZN V2475 | PLoS One. [16] | MDR | 3893(3792) | T |
| KZN 605 | Broad Institute | XDR | 4024(26) | B |
| KZN R506 | PLoS One. [16] | XDR | 3902(46) | T |
Details for input strains for the M. tuberculosis case study. The first number in column called ’# of genes’ corresponds to the number of annotated genes, the second (in brackets) corresponds to the number of genes excluded in the study due to unusual start or stop codons or sequence length not divisible by three. In order to avoid ambiguity in naming the same strain sequenced by two labs we introduce an additional suffix (T or B). Characters in last column, called ’lab.’, describe the sequencing laboratories: B - The Broad Institute, T - Texas A&M University, C - Chinese National Human Genome Center at Shanghai, S - Sanger Institute.