Table 4.
S. aureus dataset. Details for input strains for the S. aureus case study. The first number in column called ’# of genes’ corresponds to the number of annotated genes, the second (in brackets) corresponds to the number of genes excluded in the study due to unusual start or stop codons or sequence length not divisible by three.
| strain ID | source (GenBank ID) | # of genes | genome length | lab. |
|---|---|---|---|---|
| TW20 0582 | FN433596 | 2769(5) | 3043210 | Welcome Trust Sanger Institute |
| JKD6008 | CP002120 | 2680(0) | 2924344 | Monash University |
| JH9 | CP000703 | 2769(5) | 2906700 | US DOE Joint Genome Institute |
| JH1 | CP000736 | 2680(0) | 2906507 | US DOE Joint Genome Institute |
| MRSA252 | BX571856 | 2697(0) | 2902619 | Sanger Institute |
| Mu3 | AP009324 | 2746(0) | 2880168 | Juntendo University |
| Newman | AP009351 | 2655(5) | 2878897 | Juntendo University |
| Mu50 | BA000017 | 2699(63) | 2878529 | Juntendo University |
| USA300 TCH1516 | CP000730 | 2624(0) | 2872915 | Baylor College of Medicine |
| USA300 FPR3757 | CP000255 | 2699(61) | 2872769 | University of California, San Francisco |
| ST398 S0385 | AM990992 | 2657(0) | 2872582 | University Medical Centre Utrecht |
| ED133 | CP001996 | 2560(0) | 2832478 | University of Edinburgh |
| ED98 | CP001781 | 2699(0) | 2824404 | University of Edinburgh |
| 04-02981 | CP001844 | 2653(2) | 2821452 | Robert Koch Institute |
| NCTC 8325 | CP000253 | 2661(0) | 2821361 | University of Oklahoma Health Sciences Center |
| MW2 | BA000033 | 2650(59) | 2820462 | NITE |
| N315 | BA000018 | 2892(0) | 2814816 | Juntendo University |
| JKD6159 | CP002114 | 2632(6) | 2811435 | University of Melbourne |
| COL | CP000046 | 2593(59) | 2809422 | TIGR |
| TCH60 | CP002110 | 2555(1) | 2802675 | Baylor College of Medicine |
| MSSA476 | BX571857 | 2672(1) | 2799802 | Sanger Institute |
| RF122 | AJ938182 | 2673(0) | 2742531 | University of Minnesota |