Table 1.
Main features of the genomea
| Characteristic | Value(s) |
|||
|---|---|---|---|---|
| A. oleivorans DR1 | A. baylyi | A. calcoaceticus | A. baumannii | |
| Total size (bp) | 4,152,543 | 3,598,621 | 3,862,530 | 4,001,457 |
| No. of plasmids | None | None | None | 2 (pAB1 [13,408 bp]; pAB2 [11,302 bp]) |
| No. of DNA coding bases (bp) (% of total length) | 3,646,889 (87.8) | 3,195,476 (88.8) | 3,374,434 (87.4) | 2,898,244 (72.4) |
| G+C content (%) | 38.7 | 40.4 | 38.8 | Chromosome, 38.9; pAB1, 36.2; pAB2, 35.2 |
| No. of protein-coding genes | 3,874 | 3,325 | 3,095 | 3,370 |
| rRNA (16S-tRNAIle–tRNAAla–23S–5S) | 6 operons | 7 operons | 2 operons | 5 operons |
| tRNA | 71 | 76 | 69 | 70 |
| Average gene length (bp) | 934 | 955 | 938 | Chromosome, 888; pAB1, 692; pAB2, 1211 |
| No. (%) of protein-coding genes with function prediction | 2,746 (69.3) | 2,090 (60.9) | 1,981 (64.0) | 2,507 (72.4) |
| No. (%) of protein-coding genes with COG | 2,932 (74.0) | 2,090 (60.9) | 2,483 (80.2) | 2,716 (78.4) |
| No. of pseudogenes | None | None | Not available | 2 |
a
The information regarding the A. baylyi, A. calcoaceticus, and A. baumannii genomes is presented for comparison. The information pertaining to A. oleivorans DR1, A. baylyi, and A. baumannii is available on the IMG website (http://img.jgi.doe.gov). The information regarding A. calcoaceticus was either derived from the study of Zhan et al. (38) or calculated in this study.