Table 3.

SNPs found in transcription factor binding sites in the promoter regions of six candidate genes

MDV strain	No. of SNPs between lines	No. of SNPs in TF binding sites	Comment(s)
MMP13	12	3	Line 6 has an HMF1 site; line 7 has GATA4 and Hand1:E47 sites
SFTPA2	8	3	Line 6 has MRF2 and FAC1 sites; line 7 has IPF1 and TBP sites
IRG1	7	2	Line 7 has extra Arnt and PPARγ:RXRα sites
AMIGO2	5	2	Line 6 has extra BRCA1:USF2 and MEIS1B:HOXA9 sites
DDT	4	2	Kid3 site created (line 7); TCF11 site instead of PAX5, which is in line 6
MMP9	4	2	Line 6 has extra NF-1 and PPARalpha sites; line 7 has an extra Pax5 site