Table 4.
Raw data for virus countsa
| Gene | SNP | Virus count (means ± SEM) at dpi: |
||
|---|---|---|---|---|
| 4 | 11 | 39 | ||
| AMIGO2 | TC | 15,336 ± 3,126 (9,775) | 55,763 ± 5,710 (57,075) | 65,321 ± 6,109 (73,387) |
| CC | 13,002 ± 2,104 (12,215) | 54,677 ± 3,908 (53,420) | 53,739 ± 6,542 (52,344) | |
| DDT | CT | 10,452 ± 1,327 (10,062) | 56,160 ± 4,782 (53,132) | 62,411 ± 5,938 (70,093) |
| TT | 19,537 ± 3,877 (14,048) | 53,864 ± 4,952 (55,989) | 55,208 ± 7,046 (59,029) | |
| MMP13 | CG | 16,467 ± 3,386 (12,072) | 58,376 ± 5,280 (59,370) | 66,909 ± 6,334 (71,740) |
| GG | 11,871 ± 1,537 (12,014) | 52,218 ± 4,502 (51,932) | 52,862 ± 6,213 (56,159) | |
| SFTPA2 | TC | 14,158 ± 2,832 (11,734) | 57,632 ± 5,681 (51,714) | 54,323 ± 6,242 (57,716) |
| CC | 14,176 ± 2,532 (12,206) | 53,454 ± 4,348 (55,989) | 63,048 ± 6,347 (64,016) | |
| IRG1 | AG | 17,154 ± 2,793 (12,748) | 62,757 ± 4,091 (61,230) | 65,134 ± 5,771 (66,335) |
| GG | 9,857 ± 1,794 (6,497) | 45,072 ± 5,230 (45,072) | 51,413 ± 6,986 (55,215) | |
| IRG1 all | AG | 16,415 ± 2,546 (12,349) | 59,843 ± 3,303 (55,989) | 66,813 ± 4,449 (67,500) |
| GG | 12,948 ± 2,064 (7,974) | 47,563 ± 3,276 (50,954) | 61,017 ± 5,223 (63,878) | |
a
Raw data, with median values in parentheses, are for backcrossed chickens classified by different SNP genotypes for five genes in the top-and-tail-selected data set and for the complete set of data for IRG1 (IRG1 all).