Fig. 1.

Detection of potential bacteria and viruses by comprehensive de novo sequencing. (A) Pipeline for detecting bacteria and viruses by using data generated from a comprehensive sequencing of the tumor tissue sample. (B and C) Percentages of the reads that fall into different categories indicated by colors. The pie charts were generated based on the results of a homology search for all of the short reads (B) and both viral and bacterial sequences (C). Read numbers and percentages are shown in parentheses.