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. Author manuscript; available in PMC: 2012 Sep 1.
Published in final edited form as: Curr Protoc Bioinformatics. 2011 Sep;CHAPTER:Unit–6.1219. doi: 10.1002/0471250953.bi0612s35
-F ‘m S’ mask with Seg
-v 100000 a “don’t care” value
-b 100000 a “don’t care” value
-z db_size the number of proteins in the See “Incrementally set. add a genome” below.
-e 1e-5 recommended e-value