Table 1.
Overview of the identified MYB and MYC binding sites in the 5'-TRY minimal promoter identified by PLACE database
| 5'-TRY- nucleotide sequence |
Position relative to the ATG (start/end) |
Name of the described cis-element | Putative cis-element nucleotide sequence |
Description of the putative cis-element | |
|---|---|---|---|---|---|
| MYB1 | GTTTGGTG | -544/-551 | MYBPLANT | MACCWAMC | Binding of AmMYB305 in Antirrhinum majus to box P from gPAL2 of Phaseolus vulgaris; P box related sequences [48,49] are identified in several promoters of phenylpropanoid biosynthesis related genes (PAL, CHS, CHI, DFR, BZ1) in different plants (Phaseolus vulgaris, Antirrhinum majus, Petunia hybrida, Petroselinum crispum, Arabidopsis thaliana, Zea mays) [50] |
| MYB2 | CCAACC | -531/-536 | MYBPZM | CCWACC | Binding in promoters of A1 and BZ1 genes of phlobaphene pigmentation and flavonoid biosynthesis in Zea mays (factors, e.g. C1, P) [51] |
| MYB3 | TTTGTTA | -607/-613 | MYBGAHV | TAACAAA | Central element of the gibberellin (GA) response complex (GARC) in the high-pI alpha-amylase gene in Hordeum vulgare, binding of GaMYB [52-54]. |
| MYB4 | CCGTT | -153/-157 | MYBCOREATCYCB1 | AACGG | "Myb core" found in the promoter of Arabidopsis thaliana cyclin B1:1 gene [55]. |
| GCCGTTCGT | -150/-158 | v-MYB* | NSYAACGGN | Binding site of the v-MYB oncocgene of the avian myeloblastosis virus [56]. | |
| GGCCGTTCGT | -150/-159 | c-MYB* | NNNAACKGNC | Binding site of the c-MYB, the cellular homolog of v-MYB | |
| MYB5 | TTGAACTTGC | -404/-413 | c-MYB* | NNNAACKGNC | Binding site of the c-MYB, the cellular homolog of v-MYB |
| MYC1 | CATCTG | -399/-404 | MYC CONSENSUSAT |
CANNTG | Binding of AtMYC2 in pAtRD22 (dehydration responsive gene) in Arabidopsis thaliana. |
| MYC2 | CATGTG | -243/-248 | MYC CONSENSUSAT |
CANNTG | Binding of AtMYC2 in pAtRD22 (dehydration responsive gene) in Arabidopsis thaliana [48,49]. |
| MYCATERD1 | CATGTG | Binding of AtNAC to the ERD1 gene (early responsive to dehydration) in dehydrated Arabidopsis thaliana [57,58]. | |||
| MYCATRD22 | CACATG | Binding of AtMYC2 to the RD22 gene (dehydration responsive gene) ) in Arabidopsis thaliana [49]. |
An additional analysis marked by "*" was done by the TRANSFAC database.