Table 2. List of oligonucleotides used in this paper.
Name | Sequence 5′–3′a,b,c |
---|---|
Bacterial 5′ (967F) | |
gcctccctcgcgccatcagNNNNNCNACGCGAAGAACCTTANC | |
gcctccctcgcgccatcagNNNNNCAACGCGAAAAACCTTACC | |
gcctccctcgcgccatcagNNNNNATACGCGARGAACCTTACC | |
gcctccctcgcgccatcagNNNNNCAACGCGCAGAACCTTACC | |
gcctccctcgcgccatcagNNNNNCTAACCGANGAACCTYACC | |
Bacterial 3′ (1046R) | |
gccttgccagcccgctcagCGACAGCCATGCANCACCT | |
gccttgccagcccgctcagCGACAACCATGCANCACCT | |
gccttgccagcccgctcagCGACGGCCATGCANCACCT | |
gccttgccagcccgctcagCGACGACCATGCANCACCT | |
Archaeal 5′ (958F) | |
gcctccctcgcgccatcagNNNNNAATTGGANTCAACGCCGG | |
Archaeal 3′ (1048R) | |
1048arcR-major | gccttgccagcccgctcagCGRCGGCCATGCACCWC |
1048arcR-minor | gccttgccagcccgctcagCGRCRGCCATGYACCWC |
B27F | AGAGTTTGATCMTGGCTCAG |
U1492R | GGTTACCTTGTTACGACTT |
Nucleotide sequence presented in lower case is the Roche adaptor sequence A (gcctccctcgcgccatcag) or B (gccttgccagcccgctcag).
NNNNN stands for a 5-bp ‘key' used to identify samples in a run containing multiple samples.
Nucleotides in upper case are the actual primer sequences, complementary to regions in the 16S rRNA gene.