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. 2011 May 12;5(11):1722–1734. doi: 10.1038/ismej.2011.55

Table 2. PCR primers used to screen isolates of Sinorhizobium medicae.

  F primer sequence R primer sequence Contig F location R location Length of product
RTXa AGTCTGTCCTCTACCGTAAG GTATAAGTGTAGCCGTCCTC 30 3572–3591 4850–4869 1297
RTXb CTGCCGCAAGCCAATTCAGG CAATGCCGCGAGCGATCTCT 30 4647–4666 6109–6128 1481
RTXc GTCCGCCATACATTGATCTC TCTGCTGTTCGGCTTCATAC 30 5995–6014 7055–7074 1079
REPa CACACGAACGGCGAAGAATA ATTCGCTGATTCCGGATGCT 165 855–874 2483–2502 1647
REPb CATGGAGGTCAGACATTGAG CCACTACGCCATATTGGCTA 165 2357–2376 2891–2910 553
SIDa GTGCGCGATGTCAACAACAG CAGCGGATTCGGCAAGTGAT 211 716–735 2196–2215 1499
SIDb TCGGCGTTCCAAGCCGTGAT TACCGCCGAACGGAGATAGC 211 3465–3484 4667–4686 1221
SIDc GACGCCGGACCAGTAGTCAA GCGTGGCCTTAACCGTTAGC 211 5157–5176 5613–5632 475
AITa TCTATGAGCGCATCCACAGG CGCAAGGATCTGTGACCATT 228 8–27 824–843 724
AITb GCAATCGGTGTCGTGAATGA ATCGGCCATCTCGACGTTAT 228 304–323 1427–1446 1142
AITc AGGAGAACGCGGCGATTGTC GCCGTCTTCCAAGCCTGCTA 228 716–735 1468–1487 771
AITd GCTCGATGGACTTCGATGTG CTCGGTGACGCTGCCGATAA 62, 228 182–201 206–225 542
RKPa GCGTTGATTCGGCTGCCGAT AGACCTTCATACGCGACTGG 59 94–113 914–933 839
RKPb GTATTGCCACGCGAGGACAC GTTCAGTCGCCGCAGCTATG 59 797–816 1794–1813 1016
RKPc TCTATCGCCTCGATCAGTCT TGCGTGTCTTCCATCTCTAC 59 1559–1578 3004–3023 1464
RKPd ATCGCTCGTGGTAGAGATGG CGCAAGAACCGTCCTAACAG 59, 179 2994–3013 147–166 989
RKPe GGAAGTAGTTGCGGCGCTTG TCCTTCTTGGCGTGTATCGG 179 289–308 994–1013 724
RKPf GCGGCATTAAGGCGGTGTCT TCCGGTTAAGCGCATGGTCC 47 593–612 948–967 374
RKPg TTGACTTCGGCGTGAACTCC TACGACAGCGATGGCAATGG 47 725–744 2191–2210 1485
RKPh AATCGGCTGCGGTGATGCTA GCGGCATTCGGCAATCTTGA 47 2129–2148 3368–3387 1258