Table 2. PCR primers used to screen isolates of Sinorhizobium medicae.
F primer sequence | R primer sequence | Contig | F location | R location | Length of product | |
---|---|---|---|---|---|---|
RTXa | AGTCTGTCCTCTACCGTAAG | GTATAAGTGTAGCCGTCCTC | 30 | 3572–3591 | 4850–4869 | 1297 |
RTXb | CTGCCGCAAGCCAATTCAGG | CAATGCCGCGAGCGATCTCT | 30 | 4647–4666 | 6109–6128 | 1481 |
RTXc | GTCCGCCATACATTGATCTC | TCTGCTGTTCGGCTTCATAC | 30 | 5995–6014 | 7055–7074 | 1079 |
REPa | CACACGAACGGCGAAGAATA | ATTCGCTGATTCCGGATGCT | 165 | 855–874 | 2483–2502 | 1647 |
REPb | CATGGAGGTCAGACATTGAG | CCACTACGCCATATTGGCTA | 165 | 2357–2376 | 2891–2910 | 553 |
SIDa | GTGCGCGATGTCAACAACAG | CAGCGGATTCGGCAAGTGAT | 211 | 716–735 | 2196–2215 | 1499 |
SIDb | TCGGCGTTCCAAGCCGTGAT | TACCGCCGAACGGAGATAGC | 211 | 3465–3484 | 4667–4686 | 1221 |
SIDc | GACGCCGGACCAGTAGTCAA | GCGTGGCCTTAACCGTTAGC | 211 | 5157–5176 | 5613–5632 | 475 |
AITa | TCTATGAGCGCATCCACAGG | CGCAAGGATCTGTGACCATT | 228 | 8–27 | 824–843 | 724 |
AITb | GCAATCGGTGTCGTGAATGA | ATCGGCCATCTCGACGTTAT | 228 | 304–323 | 1427–1446 | 1142 |
AITc | AGGAGAACGCGGCGATTGTC | GCCGTCTTCCAAGCCTGCTA | 228 | 716–735 | 1468–1487 | 771 |
AITd | GCTCGATGGACTTCGATGTG | CTCGGTGACGCTGCCGATAA | 62, 228 | 182–201 | 206–225 | 542 |
RKPa | GCGTTGATTCGGCTGCCGAT | AGACCTTCATACGCGACTGG | 59 | 94–113 | 914–933 | 839 |
RKPb | GTATTGCCACGCGAGGACAC | GTTCAGTCGCCGCAGCTATG | 59 | 797–816 | 1794–1813 | 1016 |
RKPc | TCTATCGCCTCGATCAGTCT | TGCGTGTCTTCCATCTCTAC | 59 | 1559–1578 | 3004–3023 | 1464 |
RKPd | ATCGCTCGTGGTAGAGATGG | CGCAAGAACCGTCCTAACAG | 59, 179 | 2994–3013 | 147–166 | 989 |
RKPe | GGAAGTAGTTGCGGCGCTTG | TCCTTCTTGGCGTGTATCGG | 179 | 289–308 | 994–1013 | 724 |
RKPf | GCGGCATTAAGGCGGTGTCT | TCCGGTTAAGCGCATGGTCC | 47 | 593–612 | 948–967 | 374 |
RKPg | TTGACTTCGGCGTGAACTCC | TACGACAGCGATGGCAATGG | 47 | 725–744 | 2191–2210 | 1485 |
RKPh | AATCGGCTGCGGTGATGCTA | GCGGCATTCGGCAATCTTGA | 47 | 2129–2148 | 3368–3387 | 1258 |