Table 1.
Potential secondary structure of individual PATRR11 variants by free energy calculation
| Type of PATRR11 | Nucleotide bp (Accession No.) | Gds Kcal/mole | Gstru Kcal/mole | ΔG Kcal/mole | Translocation frequency |
|---|---|---|---|---|---|
| L-PATRR11 | 445(AF391129) | -392.5 | -178.4 | 17.9 | 1.32 × 10-5 |
| 450(AB235178) | -397.5 | -187.9 | 10.9 | 2.11 × 10-5a | |
| SS-PATRR11 | 292(AB235183) | -259.8 | -121.8 | 8.1 | 1.73 × 10-6 |
| 350(AB235180) | -314 | -144.7 | 12.3 | 1.82 × 10-6a | |
| AS-PATRR11 | 386(AB235182) | -335.2 | -147.3 | 20.3 | 1.71 × 10-6 |
| 212(AF391128) | -195.6 | -83.1 | 14.7 | <4.05 × 10-8a | |
| 277(AB235187) | -247.9 | -104.2 | 19.8 | <1.67 × 10-7 | |
| 483(AB235186) | -252.9 | -99.95 | 26.5 | <7.62 × 10-8 | |
| 434(AB235190) | -380.1 | -157.3 | 32.8 | 6.81 × 10-7 | |
a These values are the mean of 4 (450 bp L-PATRR11 allele), 2 (350 bp SS-PATRR11 allele), and 3 (212 bp AS-PATRR11 allele)samples.