Table 2. SSR loci identified in Physalis peruviana leaf Expressed Sequence Tags (ESTs).
Repeat Type | Perfect | Imperfect | Frequency | |||||
CDS | UTRs | Total | CDS | UTRs | Total | |||
Dinucleotide | - | 34 | 34 | 2 | 98 | 100 | 134 | 8% |
Trinucleotide | 36 | 81 | 117 | 178 | 249 | 427 | 544 | 36% |
Tetranucleotide | 1 | 16 | 17 | 13 | 69 | 82 | 99 | 7% |
Pentanucleotide | - | 6 | 6 | 47 | 160 | 207 | 213 | 14% |
Hexanucleotide | 46 | 64 | 110 | 64 | 356 | 420 | 530 | 35% |
Total | 83 | 201 | 284 | 304 | 932 | 1236 | 1520 | - |
Frequency | 6% | 13% | 19% | 20% | 61% | 81% |
The number of SSR loci identified at coding sequences (CDS) and Untranslated Regions (UTRs) by using perfect and imperfect repeat search criteria.