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. 2011 Sep 2;12:78. doi: 10.1186/1471-2156-12-78

Table 2.

Distribution of SNP sites within exon2 of MHC IIB allelic sequences of half-smooth tongue sole

Serial
number
Position Base
type
Allele no.
(n = 88)
Frequency Serial
number
Position Base
type
Allele no.
(n = 88)
Frequency
1 6 T 87 0.989 39 104-106 ATC 51 0.580
C 1 0.011 ATT 1 0.011
2 9-11 CTA 52 0.591 ATG 1 0.011
GTA 1 0.011 CAG 35 0.398
GAG 35 0.398 40 109-111 TCG 84 0.955
3 12 C 17 0.193 TCA 2 0.023
T 34 0.386 CCG 1 0.011
A 7 0.080 TTG 1 0.011
G 30 0.341 41 124-126 GGA 49 0.557
4 13 A 82 0.932 AGA 12 0.136
T 5 0.057 GAG 27 0.307
G 1 0.011 42 130 A 56 0.636
5 14-15 AT 30 0.341 T 32 0.364
AC 1 0.011 43 143 C 2 0.023
TT 55 0.625 T 86 0.977
CT 2 0.023 44 148-149 AT 49 0.557
6 16 C 32 0.364 TA 8 0.091
T 20 0.227 TT 31 0.352
A 36 0.409 45 156-157 CC 1 0.011
7 18 G 39 0.443 TA 24 0.273
A 49 0.557 TC 63 0.716
8 19 T 33 0.375 46 163 C 87 0.989
G 20 0.227 T 1 0.011
C 30 0.341 47 168-169 AG 71 0.807
A 5 0.057 GC 17 0.193
9 20 G 46 0.523 48 170-172 ATG 75 0.852
A 34 0.386 ATT 9 0.102
C 8 0.091 TTG 3 0.034
10 21-23 ACA 53 0.602 ACT 1 0.011
GTG 35 0.398 49 174 G 1 0.011
11 24 G 74 0.841 A 87 0.989
A 14 0.159 50 177-178 GA 86 0.977
12 25 A 35 0.398 AA 1 0.011
G 31 0.352 GG 1 0.011
T 19 0.216 51 181-183 GTC 80 0.909
C 3 0.034 ATC 7 0.080
13 26 T 5 0.057 GAA 1 0.011
C 83 0.943 52 193 C 24 0.273
14 28-29 CC 52 0.591 T 64 0.727
CA 1 0.011 53 196 A 62 0.705
GA 35 0.398 G 26 0.295
15 32-33 CG 35 0.398 54 198 A 69 0.784
TG 1 0.011 G 19 0.216
TC 52 0.591 55 199-200 GG 40 0.455
16 38-39 CA 52 0.591 GT 18 0.205
CG 1 0.011 TG 8 0.091
TA 35 0.398 CG 22 0.25
17 40-41 AC 51 0.580 56 205 A 67 0.761
GC 1 0.011 C 20 0.227
AT 35 0.398 G 1 0.011
CT 1 0.011 57 207-208 GA 62 0.705
18 44 C 36 0.409 AC 3 0.034
T 52 0.591 GG 8 0.091
19 47-49 AAA 52 0.591 GC 5 0.057
AAG 1 0.011 58 210-211 AA 86 0.977
TAA 19 0.216 GA 1 0.011
TGA 16 0.182 AT 1 0.011
20 51 G 53 0.602 59 218 G 87 0.989
C 35 0.398 T 1 0.011
21 53 G 36 0.409 60 220 A 87 0.989
C 52 0.591 G 1 0.011
22 55-56 AC 69 0.784 61 226-227 TG 47 0.534
AT 18 0.205 TA 40 0.455
GC 1 0.011 CG 1 0.011
23 58 A 87 0.989 62 228 A 50 0.568
G 1 0.011 C 29 0.330
24 63-64 GC 51 0.580 T 9 0.102
GT 1 0.011 63 229 A 82 0.932
GA 1 0.011 T 2 0.023
CA 35 0.398 G 4 0.045
25 67 A 68 0.773 64 231-234 AAC 61 0.693
T 20 0.227 ACT 2 0.022
26 72 C 13 0.148 CAC 20 0.227
G 40 0.455 AGC 5 0.057
T 35 0.398 65 237-238 GG 79 0.898
27 74 C 40 0.455 GA 5 0.057
G 48 0.545 AG 4 0.045
28 78 C 38 0.432 66 240-241 AA 10 0.114
T 50 0.568 AT 54 0.614
29 80 C 35 0.398 CT 23 0.261
T 53 0.602 GT 1 0.011
30 82-83 AC 52 0.591 67 242-243 TG 46 0.523
AT 35 0.398 TT 19 0.216
GT 1 0.011 GG 23 0.261
31 84-85 TT 30 0.341 68 245-246 CT 68 0.773
CT 23 0.261 CA 19 0.216
TA 35 0.398 AT 1 0.011
32 87 A 87 0.989 69 248 T 2 0.023
G 1 0.011 C 86 0.977
33 90 A 86 0.977 70 250-253 ACCA 10 0.114
G 2 0.023 ACGC 64 0.727
34 92-94 ACT 52 0.591 AGCC 1 0.011
GAG 36 0.409 GGAC 12 0.136
35 96 G 35 0.398 ACGG 1 0.011
A 53 0.602 71 254-256 TGC 70 0.796
36 98-99 GA 42 0.477 TGG 12 0.136
GT 11 0.125 GTT 6 0.068
AT 35 0.398 72 256-258 TT 12 0.136
37 100 C 1 0.011 TC 63 0.716
A 38 0.432 CC 2 0.023
T 49 0.557 TG 11 0.125
38 101-102 CA 34 0.386
CG 16 0.182
GA 3 0.034
TG 31 0.352
TA 4 0.046