Table 2.
Serial number |
Position | Base type |
Allele no. (n = 88) |
Frequency | Serial number |
Position | Base type |
Allele no. (n = 88) |
Frequency |
---|---|---|---|---|---|---|---|---|---|
1 | 6 | T | 87 | 0.989 | 39 | 104-106 | ATC | 51 | 0.580 |
C | 1 | 0.011 | ATT | 1 | 0.011 | ||||
2 | 9-11 | CTA | 52 | 0.591 | ATG | 1 | 0.011 | ||
GTA | 1 | 0.011 | CAG | 35 | 0.398 | ||||
GAG | 35 | 0.398 | 40 | 109-111 | TCG | 84 | 0.955 | ||
3 | 12 | C | 17 | 0.193 | TCA | 2 | 0.023 | ||
T | 34 | 0.386 | CCG | 1 | 0.011 | ||||
A | 7 | 0.080 | TTG | 1 | 0.011 | ||||
G | 30 | 0.341 | 41 | 124-126 | GGA | 49 | 0.557 | ||
4 | 13 | A | 82 | 0.932 | AGA | 12 | 0.136 | ||
T | 5 | 0.057 | GAG | 27 | 0.307 | ||||
G | 1 | 0.011 | 42 | 130 | A | 56 | 0.636 | ||
5 | 14-15 | AT | 30 | 0.341 | T | 32 | 0.364 | ||
AC | 1 | 0.011 | 43 | 143 | C | 2 | 0.023 | ||
TT | 55 | 0.625 | T | 86 | 0.977 | ||||
CT | 2 | 0.023 | 44 | 148-149 | AT | 49 | 0.557 | ||
6 | 16 | C | 32 | 0.364 | TA | 8 | 0.091 | ||
T | 20 | 0.227 | TT | 31 | 0.352 | ||||
A | 36 | 0.409 | 45 | 156-157 | CC | 1 | 0.011 | ||
7 | 18 | G | 39 | 0.443 | TA | 24 | 0.273 | ||
A | 49 | 0.557 | TC | 63 | 0.716 | ||||
8 | 19 | T | 33 | 0.375 | 46 | 163 | C | 87 | 0.989 |
G | 20 | 0.227 | T | 1 | 0.011 | ||||
C | 30 | 0.341 | 47 | 168-169 | AG | 71 | 0.807 | ||
A | 5 | 0.057 | GC | 17 | 0.193 | ||||
9 | 20 | G | 46 | 0.523 | 48 | 170-172 | ATG | 75 | 0.852 |
A | 34 | 0.386 | ATT | 9 | 0.102 | ||||
C | 8 | 0.091 | TTG | 3 | 0.034 | ||||
10 | 21-23 | ACA | 53 | 0.602 | ACT | 1 | 0.011 | ||
GTG | 35 | 0.398 | 49 | 174 | G | 1 | 0.011 | ||
11 | 24 | G | 74 | 0.841 | A | 87 | 0.989 | ||
A | 14 | 0.159 | 50 | 177-178 | GA | 86 | 0.977 | ||
12 | 25 | A | 35 | 0.398 | AA | 1 | 0.011 | ||
G | 31 | 0.352 | GG | 1 | 0.011 | ||||
T | 19 | 0.216 | 51 | 181-183 | GTC | 80 | 0.909 | ||
C | 3 | 0.034 | ATC | 7 | 0.080 | ||||
13 | 26 | T | 5 | 0.057 | GAA | 1 | 0.011 | ||
C | 83 | 0.943 | 52 | 193 | C | 24 | 0.273 | ||
14 | 28-29 | CC | 52 | 0.591 | T | 64 | 0.727 | ||
CA | 1 | 0.011 | 53 | 196 | A | 62 | 0.705 | ||
GA | 35 | 0.398 | G | 26 | 0.295 | ||||
15 | 32-33 | CG | 35 | 0.398 | 54 | 198 | A | 69 | 0.784 |
TG | 1 | 0.011 | G | 19 | 0.216 | ||||
TC | 52 | 0.591 | 55 | 199-200 | GG | 40 | 0.455 | ||
16 | 38-39 | CA | 52 | 0.591 | GT | 18 | 0.205 | ||
CG | 1 | 0.011 | TG | 8 | 0.091 | ||||
TA | 35 | 0.398 | CG | 22 | 0.25 | ||||
17 | 40-41 | AC | 51 | 0.580 | 56 | 205 | A | 67 | 0.761 |
GC | 1 | 0.011 | C | 20 | 0.227 | ||||
AT | 35 | 0.398 | G | 1 | 0.011 | ||||
CT | 1 | 0.011 | 57 | 207-208 | GA | 62 | 0.705 | ||
18 | 44 | C | 36 | 0.409 | AC | 3 | 0.034 | ||
T | 52 | 0.591 | GG | 8 | 0.091 | ||||
19 | 47-49 | AAA | 52 | 0.591 | GC | 5 | 0.057 | ||
AAG | 1 | 0.011 | 58 | 210-211 | AA | 86 | 0.977 | ||
TAA | 19 | 0.216 | GA | 1 | 0.011 | ||||
TGA | 16 | 0.182 | AT | 1 | 0.011 | ||||
20 | 51 | G | 53 | 0.602 | 59 | 218 | G | 87 | 0.989 |
C | 35 | 0.398 | T | 1 | 0.011 | ||||
21 | 53 | G | 36 | 0.409 | 60 | 220 | A | 87 | 0.989 |
C | 52 | 0.591 | G | 1 | 0.011 | ||||
22 | 55-56 | AC | 69 | 0.784 | 61 | 226-227 | TG | 47 | 0.534 |
AT | 18 | 0.205 | TA | 40 | 0.455 | ||||
GC | 1 | 0.011 | CG | 1 | 0.011 | ||||
23 | 58 | A | 87 | 0.989 | 62 | 228 | A | 50 | 0.568 |
G | 1 | 0.011 | C | 29 | 0.330 | ||||
24 | 63-64 | GC | 51 | 0.580 | T | 9 | 0.102 | ||
GT | 1 | 0.011 | 63 | 229 | A | 82 | 0.932 | ||
GA | 1 | 0.011 | T | 2 | 0.023 | ||||
CA | 35 | 0.398 | G | 4 | 0.045 | ||||
25 | 67 | A | 68 | 0.773 | 64 | 231-234 | AAC | 61 | 0.693 |
T | 20 | 0.227 | ACT | 2 | 0.022 | ||||
26 | 72 | C | 13 | 0.148 | CAC | 20 | 0.227 | ||
G | 40 | 0.455 | AGC | 5 | 0.057 | ||||
T | 35 | 0.398 | 65 | 237-238 | GG | 79 | 0.898 | ||
27 | 74 | C | 40 | 0.455 | GA | 5 | 0.057 | ||
G | 48 | 0.545 | AG | 4 | 0.045 | ||||
28 | 78 | C | 38 | 0.432 | 66 | 240-241 | AA | 10 | 0.114 |
T | 50 | 0.568 | AT | 54 | 0.614 | ||||
29 | 80 | C | 35 | 0.398 | CT | 23 | 0.261 | ||
T | 53 | 0.602 | GT | 1 | 0.011 | ||||
30 | 82-83 | AC | 52 | 0.591 | 67 | 242-243 | TG | 46 | 0.523 |
AT | 35 | 0.398 | TT | 19 | 0.216 | ||||
GT | 1 | 0.011 | GG | 23 | 0.261 | ||||
31 | 84-85 | TT | 30 | 0.341 | 68 | 245-246 | CT | 68 | 0.773 |
CT | 23 | 0.261 | CA | 19 | 0.216 | ||||
TA | 35 | 0.398 | AT | 1 | 0.011 | ||||
32 | 87 | A | 87 | 0.989 | 69 | 248 | T | 2 | 0.023 |
G | 1 | 0.011 | C | 86 | 0.977 | ||||
33 | 90 | A | 86 | 0.977 | 70 | 250-253 | ACCA | 10 | 0.114 |
G | 2 | 0.023 | ACGC | 64 | 0.727 | ||||
34 | 92-94 | ACT | 52 | 0.591 | AGCC | 1 | 0.011 | ||
GAG | 36 | 0.409 | GGAC | 12 | 0.136 | ||||
35 | 96 | G | 35 | 0.398 | ACGG | 1 | 0.011 | ||
A | 53 | 0.602 | 71 | 254-256 | TGC | 70 | 0.796 | ||
36 | 98-99 | GA | 42 | 0.477 | TGG | 12 | 0.136 | ||
GT | 11 | 0.125 | GTT | 6 | 0.068 | ||||
AT | 35 | 0.398 | 72 | 256-258 | TT | 12 | 0.136 | ||
37 | 100 | C | 1 | 0.011 | TC | 63 | 0.716 | ||
A | 38 | 0.432 | CC | 2 | 0.023 | ||||
T | 49 | 0.557 | TG | 11 | 0.125 | ||||
38 | 101-102 | CA | 34 | 0.386 | |||||
CG | 16 | 0.182 | |||||||
GA | 3 | 0.034 | |||||||
TG | 31 | 0.352 | |||||||
TA | 4 | 0.046 |