Table 3.
SNP | Location1 | Gene | Change | In comparison with BCG |
---|---|---|---|---|
1 | 39256 | BCGMEX_0037c | NS | Pasteur |
2 | 89198 | BCGMEX_0084 | NS | Tokyo |
3 | 338587 | PE_PGRS4 | NS | Tokyo |
4 | 535543 | sigK | NS | Tokyo |
5 | 562401 | pcaA | NS | Tokyo |
6 | 582595 | regX3 | NS | Tokyo |
7 | 585522 | BCGMEX_0506c | NS | Tokyo and Pasteur |
8 | 644544 | BCGMEX_0568 | NS | Tokyo |
9 | 739067 | mmaA3 | NS | Tokyo |
10 | 1165878 | BCGMEX_1072c | NS | Tokyo |
11 | 1294737 | narJ | NS | Pasteur |
12 | 1465719 | BCGMEX_1346c | NS | Tokyo |
13 | 1908146 | PPE22 | NS | Pasteur |
14 | 1987564 | BCGMEX_1787c | NA | Pasteur |
15 | 2171779 | BCGMEX_1957 | NS | Tokyo and Pasteur |
16 | 2261942 | pks12 | NS | Pasteur |
17 | 2268073 | pks12 | NS | Pasteur |
18 | 2599245 | hrcA | NS | Tokyo |
19 | 2625029 | BCGMEX_2390 | NA | Tokyo and Pasteur |
20 | 2637892 | PE_PGRS41 | NS | Tokyo |
21 | 2839572 | BCGMEX_2587c | NS | Pasteur |
22 | 3294834 | ilvN | NS | Pasteur |
23 | 3433045 | PPE50 | NS | Tokyo |
24 | 3433175 | PPE50 | NS | Tokyo |
25 | 3537078 | BCGMEX_3256 | NS | Tokyo |
26 | 3592845 | BCGMEX_3305c | NS | Tokyo |
27 | 3674969 | sdhB | NS | Tokyo |
28 | 3785919 | BCGMEX_3469 | NS | Tokyo |
29 | 4015927 | hpt | NS | Tokyo |
30 | 4059882 | BCGMEX_3724 | NA | Pasteur |
31 | 4069095 | BCGMEX_3734 | NS | Tokyo |
32 | 4075693 | ponA2 | NS | Tokyo and Pasteur |
33 | 4087843 | BCGMEX_3752 | NS | Tokyo |
1Locations and names of affected genes follow BCG Mexico 1931; bold text indicates previously reported SNPs; NS = non-synonymous; NA = not annotated