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. 2011 Jul 29;9:43. doi: 10.1186/1477-5956-9-43

Table 1.

Phenol-soluble proteins identified from 2-D (IEF-SDS-PAGE) gels of the acidic (pH 3-5.4; spot nos. A2- 40 in figure 2) and basic (pH 5.4-10; spot nos. B4-37 in figure 2) region proteins from C. comosa rhizomes, as analyzed by LC/MS/MS.

Spot Uniport ID Protein name Organism Sequence coverage (%) Peptides matched Theoretical Function
MW (Da) pI
A2 Q40687 Guanine nucleotide-binding protein subunit beta Oryza sativa 3 1 41,726 7.13 Protein signaling
A3 Q9FNA6 Genomic DNA, chromosome 5, P1 clone Arabidopsis thaliana 6 1 60,231 5.56 Unknown
A5 P32033 Protein ycf2 Cuscuta reflexa 7 1 234,393 9.25 ATP binding
A8 O64637 Cytochrome P450 76C2 Arabidopsis thaliana 3 2 57,221 6.50 Oxidoreductase
A7 Q9MAZ0 Nonclathrin coat protein Zea mays 6 1 19,928 4.81 Protein transport
A9 P30182 DNA topoisomerase 2 Arabidopsis thaliana 2 2 164,005 7.25 ATP binding
A11 Q6ZBQ5 Hypothetical protein Oryza sativa 7 1 15,105 11.6 Unknown
A12 Q9ZPH2 Monothiol glutaredoxin-S17 Arabidopsis thaliana 3 1 53,082 5.01 Electron carrier
A13 P27898 Myb-related protein P Zea mays 2 1 43,729 10.1 Transcription
A16 A9SAC0 Predicted protein Physcomitrella patens subsp patens 4 1 17,421. 5.28 Unknown
A17 Q9LDQ8 Similarity to proton pump interactor Arabidopsis thaliana 1 1 58,552 5.66 Unknown
A18 Q2QM00 Type IIB DNA topoisomerase family protein Oryza sativa 1 1 55,342 5.62 DNA/ATP binding
A19 Q9LVP9 Vesicle transport v-SNARE 13 Arabidopsis thaliana 4 1 25,026 9.41 Protein transport
A20 Q5I2R0 minus agglutinin (SAD1) Chlamydomonas incerta 1 2 404,525 6.08 Defense
A25 Q9GEZ3 NADH dehydrogenase subunit F Gymnosteris parvula 2 1 37,892 9.74 Oxidoreductase
A27 Q6V8L5 Lectin Typhonium divaricatum 12 4 20,250 9.17 Defense
A31 Q6RHR1 Basic beta-1,3-glucanase Capsicum annuum 6 1 17,521 11.3 Metabolism
A28 O49565 Putative F-box protein At4g21240 Arabidopsis thaliana 2 1 48,377 5.83 Unknown
A34 Q41625 Mannose-binding lectin precursor Tulipa hybrid cultivar 13 4 19,556 5.60 Defense
A40 Q0ZIZ4 ATP-dependent Clp protease proteolytic subunit Vitis vinifera 5 1 22,060 4.75 Proteolysis
B4 P93262 Phosphoglucomutase Mesembryanthemum crystallinum 2 1 63,446 5.87 Metabolism
B5 Q94CI8 Glycine-rich protein Solanum lycopersicum 2 1 23,420 5.88 Unknown
B6 Q1PCD2 glucose 6 phosphate isomerase Solanum lycopersicum 5 2 62,739 6.56 Metabolism
B7 Q8LKB0 enolase Musa acuminata 21 2 15,864 7.83 Metabolism
B8 Q06H19 UDP glucose pyrophosphorylase Arachis hypogaea 22 3 16,851 7.30 Metabolism
B9 Q8S9B8 UGPase PC Pyrus pyrifolia 3 1 50,719 5.90 Metabolism
B10 B2X0E6 glyceraldehyde 3 phosphate dehydrogenase Mallotus nesophilus 47 2 32,795 5.96 Metabolism
B11 Q5PY03 glyceraldehyde 3 phosphate dehydrogenase Musa acuminata 2 1 35,974 6.20 Metabolism
B12 Q2XQF4 glyceraldehyde 3 phosphate dehydrogenase Elaeis guineensis 8 2 32,135 7.42 Metabolism
B13 P34922 glyceraldehyde 3 phosphate dehydrogenase Pisum sativum 9 3 36,586 6.63 Metabolism
B14 A5JEJ7 glyceraldehyde 3 phosphate dehydrogenase Zehneria keayana 13 1 7,001 9.87 Metabolism
B15 P84733 Putative cytochrome c oxidase subunit II PS17 Pinus strobus 50 1 33,265 7.42 Unknown
B16 O82450 branched chain alpha keto acid decarboxylase Arabidopsis thaliana 2 1 38,709 6.27 Oxidoreductase
B17 Q5ILG5 cysteine protease gp3a Zingiber officinale 4 4 52,062 6.17 Peptidase
B18 Q01H20 Predicted ATPase (ISS) Ostreococcus tauri 1 1 57,490 5.84 ATP binding
B19 P25251 cysteine protease COT44 Brassica napus 4 1 36,277 8.05 Peptidase
B21 Q9FE01 L-ascorbate peroxidase 2 Oryza sativa 15 3 27,101 5.21 Stress/Defense
B23 Q41561 Heat shock protein 16.9C Triticum aestivum 16 2 14,376 6.23 Stress
B24 O22373 Superoxide dismutase [Cu-Zn] Capsicum annuum 10 2 15,279 5.13 Stress/Defense
B33 Q8LEA2 Gibberellin 2-beta-dioxygenase 1 Arabidopsis thaliana 7 2 36,709 8.53 Oxidoreductase
B34 Q94A43 BES1/BZR1 homolog protein 2 Arabidopsis thaliana 8 1 34,174 8.63 Transcription
B37 Q09023 Endochitinase CH25 precursor Brassica napus 8 1 34,793 6.29 Metabolism