Table 1.
The pair-wise comparison of general-purpose matrices on groups from the SUP sub-set.
| VTML | GONN | BL30 | BL50 | BL62 | PAM120 | PAM160 | PAM250 | BC-STR | STRM | |
|---|---|---|---|---|---|---|---|---|---|---|
| VTML | 0;0 | 55;5 | 98;12 | 28;15 | 23;11 | 81;4 | 83;4 | 78;8 | 44;16 | 59;5 |
| GONN | 5;55 | 0;0 | 41;16 | 11;47 | 13;42 | 27;10 | 27;10 | 33;8 | 16;43 | 24;19 |
| BL30 | 12;98 | 16;41 | 0;0 | 9;77 | 12;82 | 18;35 | 21;28 | 20;29 | 4;64 | 12;47 |
| BL50 | 15;28 | 47;11 | 77;9 | 0;0 | 12;10 | 57;6 | 53;3 | 59;6 | 28;15 | 56;11 |
| BL62 | 11;23 | 42;13 | 82;12 | 10;12 | 0;0 | 60;7 | 51;9 | 56;11 | 23;21 | 43;8 |
| PAM120 | 4;81 | 10;27 | 35;18 | 6;57 | 7;60 | 0;0 | 9;15 | 20;19 | 6;53 | 12;31 |
| PAM160 | 4;83 | 10;27 | 28;21 | 3;53 | 9;51 | 15;9 | 0;0 | 13;16 | 10;49 | 10;29 |
| PAM250 | 8;78 | 8;33 | 29;20 | 6;59 | 11;56 | 19;20 | 16;13 | 0;0 | 11;52 | 10;35 |
| BC-STR | 16;44 | 43;16 | 64;4 | 15;28 | 21;23 | 53;6 | 49;10 | 52;11 | 0;0 | 37;9 |
| STRM | 5;59 | 19;24 | 47;12 | 11;56 | 8;43 | 31;12 | 29;10 | 35;10 | 9;37 | 0;0 |
Matrices shown: VTML - VTML200 [38], GONN - Gonnet et al [40], BL30/50/62 - BLOSUM30/50/62 [20], PAM120/160/250 [21], BC-STR [24], STRM - STROMA [39]. A cell formed by the intersection of row i and column j shows the results of the pair-wise comparison of matrices (i, j), and contains two numbers: first is the number of groups on which matrix i performs significantly better than j, second is the number of groups on which matrix j performs significantly better than i.