Table 3. Five most abundant domains and families inferred from InterProScan in the transcriptome and ESP datasets.
Transcriptome | Secretome | |||||
InterPro Accession | Name | Seqs (%) | InterPro Accession | Name | Seqs (%) | |
Domains | ||||||
1 | IPR011009 | Protein kinase-like domain | 360 (1.1) | IPR014044 | CAP domain | 25 (12.0)* |
2 | IPR013783 | Immunoglobulin-like fold | 288 (0.9) | IPR006026 | Peptidase, metallopeptidase | 6 (2.9)* |
3 | IPR015943 | WD40/YVTN repeat-like-containing domain | 235 (0.7) | IPR000436 | Sushi/SCR/CCP | 5 (2.4)* |
4 | IPR015880 | Zinc finger, C2H2-like | 223 (0.7) | IPR001747 | Lipid transport protein, N-terminal | 5 (2.4)* |
5 | IPR016024 | Armadillo-type fold | 176 (0.5) | IPR008753 | Peptidase M13 | 5 (2.4)* |
Families | ||||||
1 | IPR001757 | ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter | 80 (0.2) | IPR001283 | Allergen V5/Tpx-1-related | 18 (8.7)* |
2 | IPR002198 | Short-chain dehydrogenase/reductase SDR | 69 (0.2) | IPR000718 | Peptidase M13, neprilysin | 8 (3.8)* |
3 | IPR001283 | Allergen V5/Tpx-1-related | 68 (0.2) | IPR001534 | Transthyretin-like | 5 (2.4)* |
4 | IPR020685 | Tyrosine-protein kinase | 61 (0.2) | IPR008632 | Nematode fatty acid retinoid binding | 3 (1.4)* |
5 | IPR020636 | Calcium/calmodulin-dependent protein kinase-like | 56 (0.2) | IPR009283 | Apyrase | 3 (1.4)* |
*Indicates enrichment of the domain or the family in the ESP subset when compared to the transcriptome dataset (FDR<0.5).