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| Original cell | Subclone cell | Total DE genes | Downregulated in subclone | Upregulated in subclone |
| Huh-7 | Huh-7.5.1 | 2036 | 1148 | 888 |
| Huh-7.5.1 | Huh-7.5.1c2 | 187 | 119 | 68 |
| Huh-7.5.1 | R1.09 | 2830 | 1534 | 1296 |
| Huh-7.5.1 | R1.10 | 1714 | 771 | 943 |
| Huh-7.5.1 | R2.1 | 5682 | 2470 | 3212 |
The genes were found to be differentially expressed with a false discovery rate corrected p-value of <0.01.
