. 2011 Oct 25;6(10):e26434. doi: 10.1371/journal.pone.0026434

Table 1. Genome sequences downloaded.

Group 1: NTM of interest	Group 2: M. tuberculosis complex	Group 3: Other mycobacteria
M. avium 104	M. tuberculosis⁶	M. gilvum
M avium paratuberculosis K10	M. africanum^1,7	M. leprae ¹⁰
M. intracellulare^1,2	M. bovis⁸	M. marinum
M. kansasii^1,3	M. bovis BCG⁹	M. smegmatis
M. fortuitum⁴		M. ulcerans
M. absessus⁵		M. vanbaalenii
		Mycobacterium JLS
		Mycobacterium KMS
		Mycobacterium MCS

These genome sequences were downloaded from the NCBI website [37], unless otherwise stated. Sequences are divided into NTM of interest (group one), M. tuberculosis complex (group two) and other mycobacterial species not of interest to the project.

1. Incomplete sequences,

2. M. intracellulare ATC 13950,

3. M. kansasii ATCC 12478,

4. next generation sequencing, Oxford University,

5. Genoscope,

6. M. tuberculosis CDC1551, M. tuberculosis F11, M. tuberculosis H37Ra, M. tuberculosis H37Rv sequences,

7. Sanger website[38],

8. M. bovis AF2122/97,

9. M. bovis BCG str. Pasteur 1173P2, M. bovis BCG [Fiocruz - FAP],

10. M. leprae Br4923, M. leprae TN.