Table 3. Genes with significant DNA methylation changes (FDR P<0.20) after the diet switch.
| Diet | Tissue | Gene Symbol | Illumina Probe ID | Methylation Difference | P-value | FDR P-value |
| TAD-soy to TAD-casein | muscle | HOXA5 | cg02248486 | −0.25 | 7.06E-06 | 0.087 |
| muscle | HOXA11 | cg15760840 | −0.47 | 7.47E-06 | 0.087 | |
| muscle | NTRK3 | cg26232187 | 0.26 | 1.00E-05 | 0.087 | |
| muscle | PLA2G12A | cg24974477 | −0.041 | 2.09E-05 | 0.14 | |
| TAD-casein to TAD-soy | fat | ABCG5 | cg25781162 | −0.17 | 1.35E-06 | 0.035 |
| fat | HOXB1 | cg07823492 | 0.17 | 4.45E-06 | 0.058 | |
| fat | TBX5 | cg21907579 | 0.22 | 9.04E-06 | 0.078 |