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. Author manuscript; available in PMC: 2011 Oct 25.
Published in final edited form as: J Med Chem. 2011 Jan 25;54(5):1421–1429. doi: 10.1021/jm101443u

Table 1.

Data Collection and Refinement Statisticsa

data collection
beamline SSRL BL 9-2
wavelength 0.97946 Å
space group P6122
cell dimensions a = b = 113.78 Å, c = 397.34 Å, α = β = 90°, γ = 120°
resolution 35–2.8 Å
mosaicity 0.51°
total observations 291 439
unique reflections 35 710
completeness 92.1% (87.5)
redundancy 8.1 (5.4)
I/σI 14.0 (2.1)
Rmergeb 0.174 (0. 501)
Rpimc 0.065 (0. 220)
Refinement
resolution 35–2.8 Å
no. of reflections used in reflnement 33909 (Rfree = 1801)
Rwork,d Rfreee 0.197, 0.251
total number of atoms 8006
protein 7750
Water 79
carbohydrate atoms 137
ligands 17 × 2PYR, 5 SO4
average B all atoms 43.0 Å2, main chain 41.7 Å2, side chain 42.6 Å2, carbohydrate 86.4 Å2, water 32.9 Å2, ligand 74.8 Å2
Wilson B 65.1 Å2
B rmsd bonded main chain 0.66 Å2, bonded side chain 2.41 Å2, nonbonded main chain 1.36 Å2, nonbonded side chain 4.14 Å2
rmsd from ideal geometry bond lengths 0.018 Å, bond angles 1.88°
Ramachandran Plot
most favored region 87.4%
allowed region 12.5%
generously allowed region 0.1% (D240β2)
a

Values in parentheses refer to the high-resolution shell, 2.9–2.8 Å.

b

Rmerge = ΣhklΣ|Ij(hkl) − 〈I(hkl)〉|/ΣhklΣj jI(hkl) with Ij(hkl) representing the intensity of measurement j and 〈I(hkl)〉 is the mean of measurements for the reflection hkl.

c

Rpim = Σhkl[1/(N − 1)]1/2Σj|Ij(hkl) − 〈I(hkl)〉|/ΣhklΣj jI(hkl) with N representing the redundancy.15

d

Rwork = Σhkl||Fobs(hkl)| − |Fcalc(hkl)||/Σhkl|Fobs(hkl)|, where Fobs and Fcalc are the observed and calculated structure factors, respectively.

e

Rfree is calculated with the formula for Rwork with 5% of the structure factors that were not included in the model refinement.