Table 1.
data collection | |
---|---|
beamline | SSRL BL 9-2 |
wavelength | 0.97946 Å |
space group | P6122 |
cell dimensions | a = b = 113.78 Å, c = 397.34 Å, α = β = 90°, γ = 120° |
resolution | 35–2.8 Å |
mosaicity | 0.51° |
total observations | 291 439 |
unique reflections | 35 710 |
completeness | 92.1% (87.5) |
redundancy | 8.1 (5.4) |
I/σI | 14.0 (2.1) |
Rmergeb | 0.174 (0. 501) |
Rpimc | 0.065 (0. 220) |
Refinement | |
resolution | 35–2.8 Å |
no. of reflections used in reflnement | 33909 (Rfree = 1801) |
Rwork,d Rfreee | 0.197, 0.251 |
total number of atoms | 8006 |
protein | 7750 |
Water | 79 |
carbohydrate atoms | 137 |
ligands | 17 × 2PYR, 5 SO4 |
average B | all atoms 43.0 Å2, main chain 41.7 Å2, side chain 42.6 Å2, carbohydrate 86.4 Å2, water 32.9 Å2, ligand 74.8 Å2 |
Wilson B | 65.1 Å2 |
B rmsd | bonded main chain 0.66 Å2, bonded side chain 2.41 Å2, nonbonded main chain 1.36 Å2, nonbonded side chain 4.14 Å2 |
rmsd from ideal geometry | bond lengths 0.018 Å, bond angles 1.88° |
Ramachandran Plot | |
most favored region | 87.4% |
allowed region | 12.5% |
generously allowed region | 0.1% (D240β2) |
Values in parentheses refer to the high-resolution shell, 2.9–2.8 Å.
Rmerge = ΣhklΣ|Ij(hkl) − 〈I(hkl)〉|/ΣhklΣj jI(hkl) with Ij(hkl) representing the intensity of measurement j and 〈I(hkl)〉 is the mean of measurements for the reflection hkl.
Rpim = Σhkl[1/(N − 1)]1/2Σj|Ij(hkl) − 〈I(hkl)〉|/ΣhklΣj jI(hkl) with N representing the redundancy.15
Rwork = Σhkl||Fobs(hkl)| − |Fcalc(hkl)||/Σhkl|Fobs(hkl)|, where Fobs and Fcalc are the observed and calculated structure factors, respectively.
Rfree is calculated with the formula for Rwork with 5% of the structure factors that were not included in the model refinement.