Figure 3.

Comparative evaluation of molecular vs. statistical phasing. (A) Stacked bar chart showing haplotype agreement between molecular (MOL) and statistical (STAT) phasing (blue) and disagreement (purple). A proportion of SNPs could only be phased molecularly (yellow) with <1% on average remaining unphased (green). Analysis includes all autosomal heterozygous SNPs in MP1. (B) Box plot showing concordance of MP1 molecular haplotypes (yellow) to the reference set of HapMap haplotypes derived by trio-based phasing (20 individuals). Statistically derived haplotypes for MP1 (green) show a lower concordance to HapMap haplotypes.