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. 2011 Oct 26;6(10):e25642. doi: 10.1371/journal.pone.0025642

Figure 3. Decision flow of targeted gene's multi-transcript filtration phase implemented in MysiRNA-Designer.

Figure 3

MysiRNA-Designer first check whether the mRNA entered has any other transcripts, if such cases, I get the other transcripts using NCBI blast, and perform multiple sequence alignment to these sequences. The un-gapped consensus is later calculated in order to Design siRNA targeting the desired sequence space.