Table 1. Assigned threshhold scores using the Huesken dataset to analyse each scoring tool to two thresholds to filter siRNA with expected inhibition efficiency 90%.
Min score | Min Threshold | Mean | Max Threshold | Max score | Standard Deviation | |
Reynold | 0 | 1.9 | 5.52 | 9.15 | 10 | 1.81 |
Ui-Tie | III | III | Ib | Ia | Ia | 0.84 |
Amarzguioui | −2 | −1.21 | 2.04 | 5.3 | 5 | 1.62 |
Katoh | 31 | 42.03 | 69.52 | 97.01 | 103.9 | 13.7 |
Hsieh | −2 | −1.11 | 1 | 3.11 | 4 | 1.05 |
Takasaki | −11 | −10.22 | 1.92 | 14.06 | 20.2 | 6.07 |
First, siRNA with inhibition efficiency above 90% are isolated from the dataset. Then for each scoring tool, the mean and Standard deviation is calculated and the minimum and maximum thresholds are assigned by deviation from the mean by two folds of standard deviation.