Skip to main content
. Author manuscript; available in PMC: 2011 Oct 27.
Published in final edited form as: J Chem Theory Comput. 2010;6(2):443–458. doi: 10.1021/ct900522g

Table 4. Bulk properties of 1024 water molecules simulated in the microcanonical ensemble.

All values are given as averages over 12.5ns blocks of each simulation, with standard deviations.

Property Conservative Aggressive
PMEMD d SPME MLE SPME MLE
ΔHvap, kcal/mol a 10.89 ± 0.00 10.88 ± 0.00 10.88 ± 0.00 10.88 ± 0.00 10.89 ± 0.00
T, K b 289.07 ± 0.08 289.59 ± 0.14 289.65 ± 0.03 291.72 ± 0.13 291.79 ± 0.17
D, × 10−5 cm2/s c 1.81 ± 0.02 1.83 ± 0.04 1.86 ± 0.05 1.85 ± 0.08 1.83 ± 0.07
a

Heat of vaporization, calculated by ΔHvap = −⟨E⟩+RT, where E is the mean potential energy, R is the gas constant, and T is the mean temperature

b

Mean temperature of the simulation

c

Diffusion coefficient

d

Results obtained using the PMEMD implementation of the SANDER program from the AMBER software package, running SPME with the “Aggressive” parameters, but I(pm) set uniformly to 4 and g set uniformly to 32