Table 4. Bulk properties of 1024 water molecules simulated in the microcanonical ensemble.
All values are given as averages over 12.5ns blocks of each simulation, with standard deviations.
Property | Conservative | Aggressive | |||
---|---|---|---|---|---|
PMEMD d | SPME | MLE | SPME | MLE | |
ΔHvap, kcal/mol a | 10.89 ± 0.00 | 10.88 ± 0.00 | 10.88 ± 0.00 | 10.88 ± 0.00 | 10.89 ± 0.00 |
T, K b | 289.07 ± 0.08 | 289.59 ± 0.14 | 289.65 ± 0.03 | 291.72 ± 0.13 | 291.79 ± 0.17 |
D, × 10−5 cm2/s c | 1.81 ± 0.02 | 1.83 ± 0.04 | 1.86 ± 0.05 | 1.85 ± 0.08 | 1.83 ± 0.07 |
Heat of vaporization, calculated by ΔHvap = −⟨E⟩+RT, where E is the mean potential energy, R is the gas constant, and T is the mean temperature
Mean temperature of the simulation
Diffusion coefficient
Results obtained using the PMEMD implementation of the SANDER program from the AMBER software package, running SPME with the “Aggressive” parameters, but I(pm) set uniformly to 4 and g set uniformly to 32