Table 5.

Predicted yeast gene regulatory relationships that are confirmed by ChIP-chip

BN with prior knowledge
FKH2→HHF1	FKH2→CLB2	SWI6→CLN1	FKH2→HHT1
SWI5→FKH1	SWI6→HO	SWI6→POL30	SWI4→MFA2
FKH1→SWE1	FKH2→CDC6	FKH2→SWI4	SWI4→PSA1
SWI6→HHT1	SWI5→ASH1	SWI6→CLN2	FKH2→SWE1
FKH2→HPR5	SWI6→RAD54	FKH1→RAD51	SWI6→HHF1
SWI6→AGA1	SWI4→AGA1	SWI4→MBP1
BN without prior knowledge
SWI6→POL30	SWI6→CLN1	FKH2→HHT1	SWI5→FKH1
FKH2→HHF1	SWI4→MFA2	SWI6→HO	FKH2→CLB2
SWI4→TIR1	FKH1→CDC6	FKH1→CDC20

Relationships in bold font are predicted both with and without prior knowledge.