Table 2.
Previously Characterized Regulatory Genes with High Node Scores Occurring within Each of the Nongermination and Germination Rule Sets
| AGI | Annotation | Node Score | Degree |
| Known Regulators in Nongermination Rules | Nongermination | ||
| At2g28350 | ARF10 | 206 | 22 |
| At3g24220 | NCED6 | 159 | 1 |
| At2g04240 | XERICO | 112 | 8 |
| At3g62090 | PIL2 | 106 | 6 |
| At5g07200 | Gibberellin 20-oxidase3 | 104 | 12 |
| At1g33060 | ANAC014 | 100 | 19 |
| At1g03790 | SOMNUS | 81 | 13 |
| At2g26300 | G Protein Alpha Subunit1 | 80 | 14 |
| At1g30040 | AtGA2ox2 | 80 | 3 |
| At3g45640 | AtMPK3 | 76 | 7 |
| At3g24650 | ABI3 | 68 | 14 |
| At1g09570 | PHY A | 67 | 11 |
| At1g55255 | HUB2 | 53 | 16 |
| At5g25900 | GA3 | 53 | 14 |
| At4g25420 | GA5 | 50 | 36 |
| At2g18790 | PHYB | 48 | 76 |
| At1g50420 | SCL3 | 47 | 72 |
| At1g01360 | PYL9 | 46 | 67 |
| Known Regulators in Germination Rules | Germination | ||
| At2g46340 | SPA1 | 141 | 29 |
| At5g11260 | HY5 | 71 | 17 |
| At2g40220 | ABI4 | 67 | 19 |
| At5g56860 | GNC | 45 | 76 |
Regulatory genes displayed are present within the top 2.5% of node scores for each nongermination and germination. AGI, Arabidopsis Genome Initiative.