Table 3.
MEGAN functional analysis of pseudoreads
| GO term | Number of reads |
|---|---|
| Hydrolase activity | 563 |
| Mitochondrion | 317 |
| Regulation of cellular respiration | 250 |
| Phosphatidylcholine phospholipase C activity | 154 |
| Integral to membrane | 139 |
| Metabolic process | 126 |
| Chloroplast | 117 |
| Catalytic activity | 108 |
| Endonuclease activity | 31 |
| Transferase activity | 2 |
| Total | 1807 |
The functions of proteins in nr matching 10 000 translated pseudoreads of rRNA taken from E. coli, S. acidocaldarius and S. cerevisiae are shown, with the number of reads classified to the Gene Ontology (GO) term shown.