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. Author manuscript; available in PMC: 2012 Nov 1.
Published in final edited form as: J Mol Model. 2011 Feb 11;17(11):2883–2893. doi: 10.1007/s00894-011-0975-x

Fig. 2.

Fig. 2

Root mean-square deviation over all atoms of residues 3–12 and 17–26 with respect to the initial structure of B-DNA. Group-based truncation leads to distortion of DNA. Atom-based truncation preserves the DNA’s native configuration, in agreement with the more accurate particle-mesh Ewald method