Table II.
Descriptive table of tagSNPs associated with colon and rectal cancer
| Symbol | Chromosome location | Alias | SNP | Major/minor allele | MAFa | FDR HWEb |
| IFNG | 12q14 | IFG | rs1861493 | A/G | 0.31 | 1.00 |
| IFI | rs2069718 | C/T | 0.42 | 1.00 | ||
| rs2069727 | A/G | 0.46 | 1.00 | |||
| IFNGR1 | 6q23–q24 | CD119 | rs1327474 | A/G | 0.46 | 1.00 |
| FLJ45734 | rs1327475 | C/T | 0.16 | 1.00 | ||
| IFNGR | rs3799488 | T/C | 0.12 | 1.00 | ||
| IFNGR2 | 21q22.11 | AF-1 | rs1532 | C/T | 0.30 | 0.95 |
| IFGR2 | rs2834211 | T/C | 0.10 | 0.76 | ||
| IFNGT1 | rs2834213 | A/G | 0.24 | 0.96 | ||
| rs2834215 | G/A | 0.45 | 0.87 | |||
| IRF1 | 5q31.1 | IRF-1 | rs17622656 | G/A | 0.37 | 1.00 |
| MAR | ||||||
| IRF2 | 4q34.1–q35.1 | DKFZp686F0244 | rs793801 | G/A | 0.40 | 0.22 |
| IRF2 | rs809909 | T/A | 0.33 | 0.96 | ||
| rs965225 | G/A | 0.09 | 1.00 | |||
| rs2797507 | C/A | 0.46 | 1.00 | |||
| rs3733473 | G/A | 0.20 | 1.00 | |||
| rs3756093 | C/G | 0.15 | 0.61 | |||
| rs3756094 | G/A | 0.32 | 1.00 | |||
| rs3775554 | G/C | 0.13 | 1.00 | |||
| rs3775556 | A/G | 0.26 | 0.95 | |||
| rs3775574 | A/G | 0.40 | 0.92 | |||
| rs3822118 | C/T | 0.32 | 0.96 | |||
| rs6812958 | G/A | 0.28 | 0.79 | |||
| rs6827018 | A/G | 0.14 | 0.93 | |||
| rs6856910 | T/C | 0.33 | 1.00 | |||
| rs7655800 | A/G | 0.15 | 1.00 | |||
| rs9684244 | G/C | 0.37 | 1.00 | |||
| rs11132242 | A/G | 0.38 | 0.97 | |||
| rs12512614 | G/T | 0.24 | 0.68 | |||
| rs17488206 | A/T | 0.24 | 0.98 | |||
| rs17585389 | T/C | 0.27 | 1.00 | |||
| IRF3 | 19q13.3–q13.4 | rs2304204 | A/G | 0.26 | 0.95 | |
| IRF4 | 6p25–p23 | LSIRF | rs872071 | A/G | 0.50 | 1.00 |
| MUM1 | rs1050975 | A/G | 0.09 | 0.94 | ||
| rs11242865 | C/T | 0.20 | 0.94 | |||
| rs3778607 | G/A | 0.48 | 1.00 | |||
| rs3800262 | G/A | 0.17 | 1.00 | |||
| rs7768807 | T/C | 0.25 | 1.00 | |||
| rs12211228 | G/C | 0.14 | 1.00 | |||
| IRF5 | 7q32 | rs752637 | G/A | 0.37 | 0.89 | |
| rs1874328 | T/C | 0.37 | 0.92 | |||
| IRF6 | 1q32.3–q41 | LPS | rs861020 | G/A | 0.21 | 1.00 |
| OFC6 | rs2013162 | C/A | 0.38 | 1.00 | ||
| PIT | rs2013196 | C/T | 0.20 | 0.68 | ||
| PPS | rs17015218 | A/G | 0.16 | 0.97 | ||
| VWS | ||||||
| IRF7 | 11p15.5 | IRF-7H | rs1131665 | A/G | 0.26 | 1.00 |
| IRF7A | ||||||
| IRF8 | 16q24.1 | H-ICSBP | rs305084 | T/C | 0.09 | 0.97 |
| ICSBP | rs1044873 | C/T | 0.39 | 0.96 | ||
| ICSBP1 | rs305071 | G/A | 0.12 | 0.96 | ||
| IRF8 | rs13338943 | G/T | 0.11 | 1.00 |
a
Minor allele frequency (MAF) based on control for non-Hispanic white population.
b
FDR (HWE), false discovery rate adjusted P value for Hardy–Weinberg equilibrium test; HWE based on NHW control population (sample sizes range from 2453 to 2652).