Skip to main content
. Author manuscript; available in PMC: 2012 Sep 1.
Published in final edited form as: Virology. 2011 Jul 13;417(2):320–326. doi: 10.1016/j.virol.2011.06.018

Table 2.

Divergence across compartments and diversity within compartments for untreated female patients

001M 007M 005M 003M 006M 027M
Net P-VF divergence1 12.5% ±3.1 0.9 % ±0.8 0.01% ±0.04 0.02% ±0.2 0.5% ±0.5 NC2
Plasma Diversity3 2.2% ±0.7 0.2% ±0.3 0.5%±0.4 1.5% ±0.7 5.3% ±1.2 0.8%±0.3
Vaginal Fluid Diversity3 0.4% ±0.2 1.4% ±0.9 1.2%±0.7 1.7% ±0.7 7.3% ±1.8 0%±0
1

Divergence calculated from base substitutions per site of net average between groups.

2

NC – not calculated

3

Diversity indicates base substitution per site of average over all sequence pairs for each sample.