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. 2011 Nov 1;5(11):e1373. doi: 10.1371/journal.pntd.0001373

Table 2. Mutagenesis oligonucleotides sequence.

Designation Use* Sequence (5′ to 3′)**
PCR1-5FRT-aph KmR cassette gaattcgctagcGCTGGAGCTGCTTCGAAGTTC
PCR1-3FRT-aph KmR cassette ctcgagTTCCGGGGATCCGTCGACCTGCAGTTC
PCR2-5FliD fliD deletion gaattcTCACGCACACGCTGCAGG
PCR2-5FliD-rev fliD deletion gctagcACCTAATGATGAAATTGAAGCCATGC
PCR3-3FliD fliD deletion gaattcGCTATGAACAAGTCCTGATAACAGAGGT
PCR3-3FliD-rev fliD deletion ctcgagTTAACGAGAACTCCTGGAAAGATGCTTTC GGTGAAATCTGC
PCR4-5FlgJ flgK deletion gaattcGGCGAACCCAGCTATAACGTATTTGGCG
PCR4-3FlgJ flgK deletion gctagcATTAATCAAGCTGGACATGATGGTTCC
PCR5-5FlgL flgK deletion agatctGCGTTACTGAATATTCGCTAAAGGAGAAG
PCR5-3FlgL flgK deletion ctcgagCGTATGGCCAATTACCATCGTGCGTGCG

*KmR, Kanamycin resistance gene.

**Restriction endonuclease cleavage sites are underlined. For PCR1, EcoRI, NheI and XhoI; PCR2 and PCR 4, EcoRI and NheI; PCR3, BamHI and XhoI; PCR5, BglII and XhoI.