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. 2011 Nov 1;6(11):e26400. doi: 10.1371/journal.pone.0026400

Table 5. Performance of bbTM matrices in detecting homologs from the non-redundant NCBI protein sequence database.

e-value bbTMall bbTMin bbTMout Blosum62 Phat7573 Slim161 Pam250
Inline graphic10Inline graphic 821 934 897 65 605 608 103
Inline graphic10Inline graphic 1556 1579 1977 294 1781 1832 416
Inline graphic10Inline graphic 2020 1879 2211 504 2120 2749 649
Inline graphic10Inline graphic 2201 2135 2327 650 2309 4040 812
Inline graphic10Inline graphic 2262 2212 2377 708 2385 5516 1142
Inline graphic10Inline graphic 2322 2288 2464 856 2477 7495 1475
Inline graphic10Inline graphic 2407 2437 2602 1198 2570 8538 1677
Inline graphic10Inline graphic 2573 2573 2757 1503 2799 9192 1966

Cumulative number of proteins identified as homologs of the 20 template Inline graphic-barrel membrane proteins at different Inline graphic-value obtained from Blast searches against the non-redundant NCBI protein database of 13,135,398 sequences.