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. 2011 Nov 1;6(11):e26400. doi: 10.1371/journal.pone.0026400

Table 6. Performance of bbTM matrices in detecting homologs of the human mitochondrial proteins VDAC, TOM40 and SAM50.

e-value bbTMall bbTMin bbTMout
Inline graphic10Inline graphic 266 277 269
Inline graphic10Inline graphic 335 324 348
Inline graphic10Inline graphic 355 354 360
Inline graphic10Inline graphic 364 361 371
Inline graphic10Inline graphic 369 364 373
Inline graphic10Inline graphic 378 370 381
Inline graphic10Inline graphic 381 376 384
Inline graphic10Inline graphic 383 379 388

Cumulative number of proteins identified as homologs of the human mitochondrial Inline graphic-barrel membrane proteins VDAC-1 (uniprot: VDAC1_HUMAN), TOM40 (uniprot: TOM40_HUMAN) and SAM50 (uniprot: SAM50_HUMAN), at different Inline graphic-value obtained from Blast searches against the non-redundant NCBI database of 13,135,398 sequences. These hits are all confirmed to be mitochondria proteins by manual inspection of annotation.