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. 2011 Nov 1;6(11):e26933. doi: 10.1371/journal.pone.0026933

Table 1. Total occurrence of repeats in Korean water deer genomes and the number of primers designed.

Repeat types No. of repeating units Total Primers designed
4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27
Total 14036 2925 1190 637 341 176 148 110 82 72 68 67 44 46 38 40 28 18 17 8 5 2 1 2 20101 14738
Di-nucleotide 11919 2446 1002 575 310 168 144 105 81 72 68 67 44 46 38 40 28 18 17 8 5 2 1 2 17206 12471
AT/TA 3390 577 238 133 83 45 35 23 19 18 9 15 7 9 13 12 10 8 3 3 3 1 - 2 4656 3144
CT/TC/GA/AG 3688 527 159 80 46 21 7 5 1 4 1 - 5 1 - - - - 2 - - - - - 4547 3605
CA/AC/GT/TG 4698 1,314 594 358 178 101 102 77 61 50 58 52 32 36 25 28 18 10 12 5 2 1 1 - 7813 5601
GC/CG 143 28 11 4 3 1 - - - - - - - - - - - - - - - - - - 190 121
Tri-nucleotide 2117 479 188 62 31 8 4 5 1 - - - - - - - - - - - - - - - 2895 2267
AAT/ATA/TAA/TTA/TAT/ATT 476 106 27 12 4 3 3 3 1 - - - - - - - - - - - - - - - 635 498
AAC/ACA/CAA/TTG/TGT/GTT 494 105 43 17 11 2 1 2 - - - - - - - - - - - - - - - - 675 544
ATG/TGA//GAT/TAC/ACT/CTA 90 6 5 5 1 - - - - - - - - - - - - - - - - - - - 107 78
AAG/AGA/TTC/TTC/TCT/CTT 160 21 16 1 - - - - - - - - - - - - - - - - - - - - 198 152
AGT/GTA/TAG/TCA/CAT/ATC 45 11 4 - - 2 - - - - - - - - - - - - - - - - - - 62 42
AGG/GAG/GGA/TCC/CTC/TCC 263 48 12 3 1 1 - - - - - - - - - - - - - - - - - - 328 260
ACC/CAC/CCA/TGG/GTG/GGA 226 45 11 2 2 - - - - - - - - - - - - - - - - - - - 286 241
AGC/CAG/GCA/TCG/CGT/GTC 213 97 42 15 4 - - - - - - - - - - - - - - - - - - - 371 284
ACG/CGA/GAC/TGC/GCT/CTG 83 19 18 3 3 - - - - - - - - - - - - - - - - - - - 126 97
GGC/GCG/CGG/CCG/CGC/GCC 67 21 10 4 5 - - - - - - - - - - - - - - - - - - - 107 71
Ratio of Di- to Tri- nucleotides 5.6 5.1 5.3 9.3 10.0 21.0 36.0 21.0 81.0 5.9 5.5