Table 2. Comparison chart for various coordinate/interval annotation software.

	CisGenome	PeakAnalyzer	Galaxy	BEDtools	Segtor
Input type	mostly aimed at ChIP-seq coordinates	intervals	intervals	coordinates or intervals	coordinates or intervals
Platform	GUI	GUI and command line	web	command line	web and command line
Features	closest and neighboring	closest gene + closest TSS	find closest and overlap	find closest and overlap at a specified range	closest TSS/overlap at multiple specified ranges
Target database	genes	genes	must be customized	must be customized	genes/can be customized
Supported Species	limited to a dozen	limited to Human and Mouse only	Unlimited	Unlimited	Unlimited
Statistics	not readily	not readily	yes	not readily	yes

A comparison chart for available software/platforms for coordinates/intervals annotation.