Table VII.

Results of super long loop prediction in inexact environments

PDBID	Loop start	Loop length	Number of surrounding residues	exact environment			inexact environment
				Starting structure RMSD (Å)	Backbone RMSD (Å)	Side chain RMSD (Å)	Starting structure RMSD (Å)	Backbone RMSD (Å)	Side chain RMSD (Å)
1E6U	A274	14	28	0.00	0.27	0.85	3.37	0.31	1.07
1ZEQ	X53	14	61	0.00	0.21	2.10	3.52	0.28	2.08
2BWR	A269	14	69	0.00	0.31	1.70	3.35	0.58	2.64
3BY9	A205	14	59	0.00	0.32	0.81	3.14	0.41	0.83
3EHR	A95	14	83	0.00	0.51	3.40	4.09	1.30	4.08
1QAZ	A298	15	51	0.00	0.99	3.00	3.46	2.18	4.52
1RA0	A283	15	36	0.00	0.30	2.13	6.51	1.24	2.38
1RA0	A361	15	81	0.00	0.52	1.66	5.10	0.52	1.70
3CSS	A95	15	52	0.00	0.52	1.39	3.06	1.98	3.62
1WM3	A67	16	49	0.00	0.23	1.24	3.08	0.26	1.63
Average	RMSD				0.42	1.83		0.91	2.47

The RMSD of a starting structure was calculated as the backbone RMSD of the target loop in the starting structure, but the prediction of the loop was actually built from scratch.