Table 1.
N-call analysis of mtDNA sequences using MitoChip v2.0 with Affymetrix GSEQ, sPROFILER, and ResqMi software.
| Software | Means of N-Calls in rCRS (n = 16) | N-calls decrease % | P value | Total N-Calls | N-calls decrease % | P value |
|---|---|---|---|---|---|---|
| GSEQ | 623 | 7212 | ||||
| ResqMi | 407 | 35 | p < 0.0005 | 5284 | 27 | p < 0.0003 |
| sPROFILER | 239 | 61 | p < 0.0003 | 5698 | 21 | p < 0.0003 |
The results are shown as average of N-Call numbers and % decreases. P value calculated using the Wilcoxon signed rank test comparing the percentage drop in N-call using sPROFILER software and ResqMi software against Affymetrix GSEQ software. Total N-calls refer here to both MitoChip sections (rCRS and haplotypes).