Table 3.
Proposed and the main activated substrates, the 10 amino acid residues predicted to line the substrate binding pocket of the NpnA, NpnB, and NpnC adenylation domains, and predicted substrates determined through precedence in other NRPS proteins (17)a
NRPS module | Proposed substrate | Activated substrate | % match | Amino acid at residue: |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
235 | 236 | 239 | 278 | 299 | 301 | 322 | 330 | 331 | 517 | ||||
NpnA1 | PheAc-CoA | HClN | 100 | V | G | V | W | V | A | A | S | G | K |
NpnB1 | Gln | Gln | 100 | D | A | W | L | F | G | L | I | D | K |
NpnB2 | Gly | Gly | 100 | D | I | L | A | L | G | L | I | W | K |
NpnC1 | Pro | Pro | 100 | D | V | Q | F | I | A | H | V | V | K |
NpnC2 | Phe | Phe | 100 | D | A | W | T | I | A | A | V | C | K |
NpnC3 | Ile | l-allo-Ile | 100 | D | A | F | F | L | G | V | T | F | K |
NpnC4 | Pro | Pro | 100 | D | V | Q | F | I | A | H | V | V | K |
PheAc-CoA, phenylacetate coenzyme A; HClN, hydrocinnamic acid.