Table 2.

Results determined for de novo assemblies of 454 pyrosequencing reads from Nextera and LASL fragment libraries

Phage	No. of reads		No. of contigs		N50 contig (bp)	N90 contig (bp)	Major contig(s) of alignmenta
	Before cleaning	After cleaning	Before cleaning	After cleaning			Size(s) (bp)	No. of reads	Avg coveragec (± SD)	Maximum coveragec	Pairwise identity (%)	GC (%)
Angelica	4,908	3,968	11	7	28,452	18,196	28,452	1,677	22 (12)	73	99.5	66.9
							18,196	1,396	29 (15)	73	93.1	65.8
Athena	18,599	15,198	186	5	69,410	69,410	69,410	15,180	84 (39)	253	99.1	67.5
Avrafan	15,562	12,975	4	2	41,902	41,902	41,902	12,970	111 (60)	349	99.4	66.6
Blue7	32,010	25,495	115	1	52,233	52,233	52,233	25,490	165 (54)	381	99.4	61.3
Wee	18,525	16,012	12	2	59,245	59,245	59,245	16,004	95 (39)	273	99.4	61.8
TUSD 1b	13,763	9,942	272	158	37,944	378	50,727, 37,944	5,665, 3,435	36 (11), 29 (11)	84, 70	99.4, 99.4	36.7, 37.3
TUSD 14	15,345	7,568	1,139	201	497	350	38,178	6,628	55 (16)	108	99.4	37.3
TUSD 20 (Nextera)	18,066	14,311	53	31	38,098	443	38,098	14,151	118 (31)	210	99.3	37.3
TUSD 20 (LASL)	12,705	8,855	–	20	7,610	726	7,610	1,005	26 (13)	67	99.0	38.0
TUSD 21b (Nextera)	16,061	11,184	88	5	36,669, 32,801	465, 315	36,669, 37,626	9,403, 1,754	81 (27), 15 (6)	173, 35	99.1, 99.4	35.9, 37.3
TUSD 21b (LASL)	31,069	20,588		62			37,873, 32,801	12,916, 6,640	71 (188), 39 (27)	2,326, 221	99.4, 98.9	37.2, 35.7

^aFor genomes with two or more major contigs, the information on the second contig is also listed.

^bFor TUSD phages, host DNA contamination was removed using cross_match.

^cCoverage is defined as number of bases per position in the consensus sequence.