Table 3.
Patient no. | Wound healedb | OTU 3% | OTU 5% | Shannon 3% | Shannon 5% | ACE 3% | ACE 5% | Cleaned 3% | Assemble 3% | Clusters 3% |
---|---|---|---|---|---|---|---|---|---|---|
1 | No | 136 | 55 | 4.15 | 3.22 | 163 | 59 | 10.18 | 12 | 14 |
2 | No | 469 | 181 | 5.47 | 4.45 | 565 | 204 | 11.2 | 12 | 10 |
3 | No | 652 | 321 | 5.84 | 5.00 | 816 | 384 | 14 | 13 | 14 |
4 | No | 326 | 148 | 4.60 | 3.66 | 397 | 180 | 11 | 10 | 13 |
8 | No | 814 | 391 | 5.98 | 5.04 | 1077 | 478 | 12.9 | 13 | 13 |
5 | Yes | 65 | 34 | 3.36 | 2.80 | 72 | 37 | 8.3 | 6 | 7 |
6 | Yes | 89 | 36 | 3.78 | 2.97 | 117 | 37 | 8.6 | 10 | 8 |
7 | Yes | 38 | 20 | 2.88 | 2.31 | 63 | 26 | 6.2 | 5 | 6 |
9 | Yes | 202 | 80 | 4.74 | 3.89 | 242 | 87 | 8.2 | 8 | 7 |
10 | Yes | 201 | 92 | 4.35 | 3.56 | 229 | 105 | 8.2 | 7 | 7 |
OTU, operational taxonomic unit; ACE, abundance-based coverage estimator; Shannon, Shannon diversity index; 3%, index derived from sequences with <3% divergence (>97% alignment with database sequence); 5%, index derived from sequences with <5% divergence (>95% alignment with database sequence).
Six months after baseline sample.