Table 2.
Identification of OP11-affiliated fragments from published metagenomic data sets
| Contig | Environment | Size (bp) | ORF(s)a |
|---|---|---|---|
| 1 | Oak Ridge pristine groundwater FRC FW301 | 898 | dUTP diphosphatase (EC 3.6.1.23), thymidylate kinase |
| 2 | Microbial community from a Yellowstone hot springs (Bath Lake Vista Annex) | 2,411 | LSU ribosomal protein L31P, LSU ribosomal protein L10, LSU ribosomal protein L12P, DNA gyrase subunit B (EC 5.99.1.3) |
| 3 | Microbial community from a Yellowstone hot springs (Chocolate Pots) | 1,070 | Thymidylate kinase (EC 2.7.4.9), hypothetical protein |
| 4 | Microbial community from Yellowstone hot springs (Bath Lake Vista Annex, Purple Sulfur Mats) | 1,397 | Hypothetical protein, thymidylate kinase |
| 5 | Microbial community from Yellowstone hot springs (Bath Lake Vista Annex, Purple Sulfur Mats) | 4,002 | XTP pyrophosphatase, seryl-tRNA synthetase (EC 6.1.1.11), penicillin-binding protein 1A family |
| 6 | Global ocean survey | 864 | Protein chain release factor A, LSU ribosomal protein L31 |
| 7 | Global ocean survey | 1,658 | Seryl-tRNA synthetase |
| 8 | Global ocean survey | 883 | Leucyl-tRNA synthetase |
| 9 | Global ocean survey | 1,286 | Aspartyl tRNA synthetase, nucleoside diphosphate kinase |
| 10 | Global ocean survey | 1,348 | Thymidylate kinase |
| 11 | Global ocean survey | 1,826 | Endonuclease III, Ferredoxin:NADP oxidoreductase, thymidylate kinase |
| 12 | Global ocean survey | 817 | Thymidylate kinase, DNA repair protein RadC |
a
Genes originally identified in ZG1 and used for fragment recruiting from metagenomic data sets are in boldface. LSU, large subunit.