Skip to main content
. 2011 Nov;77(21):7439–7444. doi: 10.1128/AEM.05640-11

Table 1.

Distribution of ABC transporters in some marine bacterial genomes from Roseobacter clade and SAR11 clade

Subcluster Clade Strain(s) Operon contentc
Importer
 Exporter
1 2 3 4 5 6 7 8 9 10 11
Roseobacter clade
    Alpha-3 1 Phaeobacter gallaeciensis 2.10 + + O + + + + + +
1 Roseobacter sp. MED193 + + O + +
1 Roseobacter sp. SK209-2-6 O + + + O
1 Ruegeria pomeroyi DSS-3 O + O + +
1 Ruegeria sp. R11 O + + O + + + O + +
1 Ruegeria sp. TM1040 O O +
1 Silicibacter lacuscaerulensis ITI-1157 + + + + + O + +
1 Silicibacter sp. TrichCH4B + + + O + + + + + +
2 Roseobacter litoralis Och 149 + + O + + + + +
2 Roseobacter denitrificans OCh 114 + + + + + + +
2 Roseobacter sp. GAI101 + + + O O O + O + +
2 Sulfitobacter sp. EE-36 + + + + + +
2 Sulfitobacter sp. NAS-14.1 + + + + + + +
2 Rhodobacterales bacterium HTCC2083 O + + + O + +
3 Oceanicola batsensis HTCC2597 + + + + + + + +
3 Pelagibaca bermudensis HTCC2601 + + + + + + + O + +
3 Roseibium sp. TrichSKD4 O + O + + + + +
3 Roseobacter sp. AzwK-3b O + O + +
3 Roseovarius nubinhibens ISM O + O + +
3 Roseovarius sp. 217 O + + + O
3 Roseovarius sp. TM1035 O + + O + +
3 Sagittula stellata E-37 + + + + + + O + +
4 Ketogulonicigenium vulgare Y25 + + + + + + +
4 Loktanella vestfoldensis SKA53 + + + + + O + O
4 Oceanicola granulosus HTCC2516 + + + + + + + + + +
4 Octadecabacter antarcticus 238 + + O O + O + O
4 Octadecabacter antarcticus 307 + + + + + + + + O + O
4 Roseobacter sp. CCS2 + + + + + + O + +
5 Dinoroseobacter shibae DFL12 + + + + + + + + + +
5 Jannaschia sp. CCS1 + + + + + + + + + +
5 Thalassiobium sp. R2A62 + + O + + + O + O
Erythro-Citro clade
    Alpha-4a Erythrobacter and Citromicrobium + + +
SRA11b Pelagibacter ubique ++ +
a

Erythrobacter litoralis HTCC2594, Erythrobacter sp. SD-21, Erythrobacter sp. NAP1, Citromicrobium bathyomarinum JL354, and Citromicrobium sp. JLT1363.

b

Pelagibacter ubique HTCC1062, Pelagibacter ubique HTCC1002, Pelagibacter sp. HTCC7211, Pelagibacter sp. IMCC9063, and alphaproteobacterium HIMB114.

c

Transporter classification was taken from the work of Higgins, Saier, and Schneider (23, 49, 50). Transporters were identified by KAAS (the KEGG automatic annotation server). Transporter no. 1, ribose (rbsABCD); no. 2, d-xylose (xylFHG); no. 3, fructose (frcABC); no. 4, rhamnose (rhaPQST); no. 5, glycerol-3-phosphate (ugpABCE); no. 6, sorbitol/mannitol (smoEFGK); no. 7, α-glucoside (aglEFGK); no. 8, amino acids; no. 9, capsular polysaccharide (kpsEMT); no. 10, lipoprotein (lolCDE); no. 11, lipopolysaccharide (lptBFG). Gene designations are given in parentheses. Operons containing all expected genes are characterized by ”+”; operons that apparently lack genes are characterized by ”O.” GenBank accession numbers are as follows: Phaeobacter gallaeciensis 2.10, NZ_ABIE00000000; Roseobacter sp. MED193, NZ_AANB00000000; Roseobacter sp. SK209-2-6, NZ_AAYC00000000; Ruegeria pomeroyi DSS-3, NC_006569; Ruegeria sp. R11, NZ_ABXM00000000; Ruegeria sp. TM1040, NC_008044; Silicibacter lacuscaerulensis ITI-1157, NZ_ACNX00000000; Silicibacter sp. TrichCH4B, NZ_ACNZ00000000; Roseobacter litoralis Och 149, NZ_ABIG00000000; Roseobacter denitrificans OCh 114, NC_008209; Roseobacter sp. GAI101, NZ_ABXS00000000; Sulfitobacter sp. EE-36, NZ_AALV00000000; Sulfitobacter sp. NAS-14.1, NZ_AALZ00000000; Rhodobacterales bacterium HTCC2083, NZ_ABXE00000000; Oceanicola batsensis HTCC2597, NZ_AAMO00000000; Pelagibaca bermudensis HTCC2601, NZ_AATQ00000000; Roseibium sp. TrichSKD4, NZ_AEFL00000000; Roseobacter sp. AzwK-3b, NZ_ABCR00000000; Roseovarius nubinhibens ISM, NZ_AALY00000000; Roseovarius sp. 217, NZ_AAMV00000000; Roseovarius sp. TM1035, NZ_ABCL00000000; Sagittula stellata E-37, NZ_AAYA00000000; Ketogulonicigenium vulgare Y25, NC_014625; Loktanella vestfoldensis SKA53, NZ_AAMS00000000; Oceanicola granulosus HTCC2516, NZ_AAOT00000000; Octadecabacter antarcticus 238, NZ_ABSK00000000; Octadecabacter antarcticus 307, NZ_ABSH00000000; Roseobacter sp. CCS2, NZ_AAYB00000000; Dinoroseobacter shibae DFL12, NC_009952; Jannaschia sp. CCS1, NC_007802; Thalassiobium sp. R2A62, NZ_ACOA00000000; Maritimibacter alkaliphilus HTCC2654, NZ_AAMT00000000; Citromicrobium bathyomarinum JL354, NZ_ADAE00000000; Citromicrobium sp. JLT1363, AEUE00000000; Erythrobacter litoralis HTCC2594, NC_007722; Erythrobacter sp. SD-21, NZ_ABCG00000000; Erythrobacter sp.NAP1, NZ_AAMW00000000; Pelagibacter ubique HTCC1062, NC_007205; Pelagibacter ubique HTCC1002, NZ_AAPV00000000; Pelagibacter sp. HTCC7211, NZ_ABVS00000000; Pelagibacter sp. IMCC9063, NC_015380; and Alpha proteobacterium HIMB114, NZ_ADAC00000000.