Table 9.
Analysis of tentative nodulation genes from 454 unigenes of common bean
| unigenes | matched soybean sequences | score | E-value | 454 sequencing reads | |||
|---|---|---|---|---|---|---|---|
| leaf | root | Pod | flower | ||||
| contig34312 | Glyma01g03470.1/N36a | 440 | 3.00E-124 | 40 | 24 | 26 | 63 |
| contig34712 | Glyma01g03470.1/N36a | 181 | 4.00E-46 | 1 | 9 | 12 | 9 |
| contig04894 | Glyma02g43860.1 | 499 | 5.00E-142 | 42 | 69 | 35 | 4 |
| FF0DN3U02HB71T | Glyma02g43860.1 | 119 | 5.00E-29 | 0 | 1 | 0 | 0 |
| contig27995 | Glyma04g00210.1 | 196 | 1.00E-50 | 1 | 4 | 0 | 1 |
| contig37370 | Glyma05g250100.1/Nodulin-21 | 116 | 3.00E-27 | 6 | 1 | 1 | 0 |
| contig06012 | Glyma07g33070.1/SAN1B | 430 | 2.00E-121 | 61 | 5 | 6 | 2 |
| contig14749 | Glyma07g33070.1/SAN1B | 463 | 3.00E-131 | 17 | 1 | 7 | 4 |
| contig38427 | Glyma07g33070.1/SAN1B | 607 | 7.00E-175 | 83 | 0 | 13 | 0 |
| FGQI37402G5N7N | Glyma07g33070.1/SAN1B | 117 | 1.00E-28 | 0 | 1 | 0 | 0 |
| contig06610 | Glyma07g33090.1/SAN1A | 128 | 1.00E-30 | 0 | 25 | 0 | 0 |
| contig31277 | Glyma07g33090.1/SAN1A | 409 | 5.00E-115 | 32 | 30 | 15 | 24 |
| FF0DN3U02F89J3 | Glyma07g33090.1/SAN1A | 89 | 6.00E-20 | 0 | 1 | 0 | 0 |
| contig07549 | Glyma08g05370.1 | 328 | 2.00E-90 | 12 | 29 | 16 | 1 |
| contig28119 | Glyma08g05370.1 | 191 | 6.00E-49 | 0 | 8 | 3 | 2 |
| contig30228 | Glyma08g05370.1 | 279 | 2.00E-75 | 62 | 22 | 33 | 5 |
| FF0DN3U02G2ENE | Glyma08g05370.1 | 117 | 2.00E-28 | 1 | 0 | 0 | 0 |
| contig14951 | Glyma08g12650.1/Nodulin-26a | 351 | 1.0E-97 | 102 | 11 | 49 | 20 |
| contig19563 | Glyma08g12650.1/Nodulin-26a | 119 | 7.00E-28 | 0 | 3 | 0 | 2 |
| contig33328 | Glyma09g33510.1/NORK | 202 | 1.00E-53 | 0 | 56 | 13 | 0 |
| contig05955 | Glyma10g06610.1 | 395 | 3.00E-110 | 18 | 3 | 64 | 18 |
| contig16149 | Glyma10g06610.1 | 164 | 1.00E-40 | 19 | 1 | 45 | 43 |
| FFSTDNT01DSPY6 | Glyma10g06610.1 | 138 | 7.00E-35 | 0 | 1 | 0 | 0 |
| contig05559 | Glyma10g23790.1/Nod35 | 584 | 6.00E-168 | 54 | 25 | 13 | 33 |
| contig35956 | Glyma10g39450.1/Nodulin-33 | 251 | 7.00E-68 | 109 | 44 | 42 | 6 |
| contig36020 | Glyma10g39450.1/Nodulin-33 | 450 | 1.00E-127 | 6 | 27 | 21 | 195 |
| contig14075 | Glyma11g06740.1 | 148 | 2.00E-36 | 0 | 3 | 0 | 0 |
| contig37552 | Glyma11g09330.1 | 178 | 2.00E-45 | 5 | 0 | 53 | 122 |
| FF0DN3U01DKJ7W | Glyma11g09330.2 | 92.4 | 7.00E-21 | 4 | 0 | 0 0 | |
| contig29881 | Glyma12g04390.1/GmNARK | 428 | 3.00E-120 | 24 | 15 | 34 | 4 |
| contig38136 | Glyma12g04390.1/GmNARK | 387 | 7.00E-108 | 205 | 193 | 377 | 122 |
| FGQI37401C0XA9 | Glyma12g04390.1/GmNARK | 100 | 4.00E-23 | 0 | 0 | 1 | 0 |
| contig06199 | Glyma12g05390.1 | 284 | 5.00E-77 | 15 | 2 | 1 | 0 |
| FFSTDNT01A6UXI | Glyma12g05390.1 | 111 | 2.00E-26 | 0 | 0 | 1 | 0 |
| contig11587 | Glyma12g28860.1 | 143 | 1.00E-34 | 2 | 0 | 1 | 0 |
| contig33251 | Glyma13g17420.1/Nod100 | 447 | 5.00E-126 | 8 | 14 | 27 | 58 |
| contig36251 | Glyma13g17420.1/Nod100 | 344 | 3.00E-95 | 19 | 10 | 14 | 21 |
| contig36660 | Glyma13g17420.1/Nod100 | 358 | 2.00E-99 | 11 | 10 | 27 | 119 |
| FFSTDNT01BOZRN | Glyma13g17420.1/Nod100 | 113 | 2.00E-27 | 0 | 1 | 0 | 0 |
| FFSTDNT02HOGJ9 | Glyma13g17420.1/Nod100 | 114 | 2.00E-27 | 1 | 0 | 0 | 0 |
| FGQI37402JLLRK | Glyma14g01160.1 | 144 | 1.00E-36 | 0 | 0 | 1 | 0 |
| contig02608 | Glyma14g23780.1 | 365 | 5.00E-102 | 61 | 54 | 83 | 85 |
| contig08886 | Glyma14g23780.1 | 292 | 8.00E-80 | 69 | 1 | 6 | 0 |
| FF0DN3U02FPA3G | Glyma14g23780.1 | 142 | 5.00E-36 | 0 | 0 | 1 | 0 |
| contig28379 | Glyma14g38170.1 | 380 | 2.00E-106 | 95 | 85 | 73 | 76 |
| contig33554 | Glyma14g38170.1 | 338 | 1.00E-93 | 0 | 63 | 40 | 8 |
| FF0DN3U01BBYR5 | Glyma14g38170.1 | 112 | 5.00E-27 | 0 | 1 | 0 | 0 |
| contig18937 | Glyma15g00620.1 | 113 | 4.00E-26 | 3 | 0 | 0 | 0 |
| contig01826 | Glyma15g35070.1 | 170 | 5.00E-43 | 17 | 10 | 17 | 0 |
| contig05700 | Glyma15g35070.1 | 202 | 2.00E-52 | 49 | 34 | 35 | 10 |
| FF0DN3U02GRTQS | Glyma15g35070.1 | 112 | 9.00E-27 | 0 | 1 | 0 | 0 |
| contig04872 | Glyma16g21620.1 | 699 | 0 | 13 | 10 | 26 | 35 |
| contig10706 | Glyma16g21620.1 | 229 | 1.00E-60 | 6 | 1 | 0 | 0 |
| contig28435 | Glyma16g21620.1 | 182 | 2.00E-46 | 8 | 28 | 29 | 1 |
| contig06537 | Glyma17g03340.1 | 144 | 6.00E-36 | 7 | 16 | 14 | 77 |
| contig29092 | Glyma17g03340.1 | 220 | 1.00E-58 | 6 | 11 | 3 | 2 |
| contig01836 | Glyma17g08110.1/Nod55-2 | 94.4 | 1.00E-20 | 2 | 1 | 0 | 18 |
| contig06642 | Glyma17g14220.1 | 397 | 3.00E-111 | 183 | 165 | 374 | 19 |
| contig08079 | Glyma17g14220.1 | 315 | 1.00E-86 | 3 | 2 | 4 | 0 |
| FF0DN3U01DP3JJ | Glyma17g14220.1 | 108 | 1.00E-25 | 0 | 0 | 1 | 0 |
| contig04461 | Glyma17g27490.1 | 415 | 1.00E-116 | 6 | 5 | 19 | 5 |
| contig34068 | Glyma18g02230.1/N70 | 324 | 2.00E-89 | 75 | 64 | 19 | 0 |
| contig36321 | Glyma18g02230.1/N70 | 318 | 4.00E-92 | 16 | 9 | 16 | 12 |
| FFSTDNT01DXXI7 | Glyma18g02230.1/N70 | 99 | 7.00E-23 | 1 | 0 | 0 | 0 |
| contig34962 | Glyma18g14750.1 | 197 | 1.00E-93 | 25 | 16 | 55 | 41 |
| contig08052 | Glyma19g45310.1 | 333 | 6.00E-92 | 3 | 1 | 1 | 2 |
| contig12852 | Glyma19g45310.1 | 495 | 1.00E-140 | 9 | 0 | 5 | 1 |