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. Author manuscript; available in PMC: 2012 Oct 27.
Published in final edited form as: J Phys Chem B. 2011 Oct 5;115(42):12208–12219. doi: 10.1021/jp205509w

Figure 3.

Figure 3

QM/MM-optimized geometries of key states of the reaction system for step 3, the protonation of departing O3' atom. The geometries were optimized at the QM/MM(B3LYP/6-31G*:AMBER) level. See caption of Figure 1 for the color codes for various types of atoms.