Table 2.
Logistic regression analysis for RNAPII CTD phosphorylation Whole model test
| Model | Log likelihood | DF | Chi-square | Prob > ChiSq | ||
|---|---|---|---|---|---|---|
| Difference | 1132.762 | 2 | 2265.525 | < 0.0001 | ||
| Full | 12914.338 | |||||
| Reduced | 14047.1 | |||||
| Rsquare (U) | 0.0806 | |||||
| Observations (or sum weights) | 13462 | |||||
| Parameter estimates | ||||||
| Term | Estimate | Std Error | Chi-square | Prob > ChiSq | Lower CI (95%) |
Upper CI (95%) |
| Intercept [S2P- S5P-] | 0.6877 | 0.0445 | 238.89 | < 0.0001 | 0.6005 | 0.7749 |
| log2(FPKM+1) [S2P- S5P-] | -0.4149 | 0.0158 | 691.98 | < 0.0001 | -0.4458 | -0.384 |
| Intercept [S2P+ S5P+] | -0.2791 | 0.0412 | 45.89 | < 0.0001 | -0.3599 | -0.1984 |
| log2(FPKM+1) [S2P+ S5P+] | 0.2127 | 0.0105 | 410.32 | < 0.0001 | 0.1921 | 0.2333 |
For log odds of [S2P-S5P-]/[S2P-S5P+], [S2P+S5P+]/[S2P-S5P+]