Figure 7.
FoxA1 depletion in LNCaP-1F5 cells brings about redistribution of GR binding and commensurate changes in GR-dependent transcription programme. (A) Overlap analysis of GRBs (FDR <2%) in parental (GR) and FoxA1-depleted cells (GR–siFoxA1). (B) Top-scoring cis-elements, as identified by de novo motif search in different subclasses of GRBs. (C) The number of genes up- and down-regulated by Dex (Dex–up and Dex–down, respectively) exposure in parental and FoxA1-depleted (siFoxA1) LNCaP-1F5 cells.